Studieplaner

Master of Science in Aquaculture Responsible faculty Faculty of Biosciences and Aquaculture Study programme director Professor Christel Solberg E-mail address [email protected] Language of instruction English Admission requirements Prerequisite for admission is a Bachelor's degree or equivalent in biological sciences such as Biology, Physiology, Aquaculture, Seafood Quality, Fisheries technology or Food technology. Students must have at least 60 ECTS credits bioscience courses, 5 credits mathematics, 5 credits statistics as well as 10 ECTS credits physics or chemistry. To be admitted to the Master's programme in Aquaculture, the applicants' average mark must be C or better on the ECTS scale either for the entire degree or on the core of the 60 ECTS specialisation. Programme evaluation According to general rules of the Faculty: Each course will have a oral evaluation with written report at mid-semester, electronic evaluation at the end of the semester. Assessment methods Written and oral examinations. After handing in the Master's thesis, the student will defend his/her thesis in a public lecture. After the lecture, there will be an oral examination. General description and profile of the programme The Master's programme builds on the Bachelor's degree that is required for admission to the programme. The programme's duration is 2 years (120 ECTS credits), and comprises degree courses (normally 60 credits) and an independent scientific master's thesis (normally 60 credits). The Master's thesis will normally be a supervised independent, scientific work of 60 credits; however it is also possible to write a 30 credit thesis, in which case the master degree courses will be expanded to 90 credits. For further information about the master's theses, see the course descriptions Master's thesis AK306F (30 ECTS) and Master's thesis AK305F (30 ECTS). Previously completed Master's theses at Faculty of Biosciences and Aquaculture can be found online. The degree courses normally comprises 60 credits, of which 20 credits obligatory courses and 40 credits elective courses. See the programme's website for more information on e.g. available MSc thesis projects. Learning outcomes The main aim of the Master's programme is that the students shall acquire scientific and practical skills crucial for the development of the aquaculture industry. The students will be trained to carry out laboratory analysis and to present results in the form of reports and scientific documents. Furthermore, the students shall develop attitudes and skills that will strengthen their ethical consciousness and ability to interact with other people. Students can specialise either in reproductive biology, fish health and welfare, nutrition, seafood quality or marine molecular biology. Study programme plan 2010 Autumn

2011 Spring

2011 Autumn

2012 Spring

Master of Science in Aquaculture Mandatory courses BI300F

AK303F

Elective courses KV300F

BI304F

BI210F

BI303F

BI209F

BI311F

AK320F

KJ270F

AK205F

KV201F

KV301F

BI216F BI214F AK308F AK309F AK310F

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Studieplaner BI206F

AK220F

Master's thesis

AK306F

Further education The programme shall qualify for admission to the PhD in Aquaculture at University of Nordland or other universities/colleges. Professional and occupational prospects The programme qualifies for positions as a research scholar, junior researcher at a research institution, production advisor in the feeding industry or at a fish farm, quality manager or a product developer within the aquaculture or nutrition industry. Positions within the public administration, such as executive officer or as high school/college teacher are also relevant. Revisions The study programme was updated by the Education board February 2008 with a new obligatory course in Aquaculture. Last updated by: , 2011-03-04 08:02 « Back

Emner 1st year of study Språk/Language:

Fish Health - AK205F ECTS Credits: 10 Level of course: Intermediate Level Study start: Autumn 2010 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: Norwegian Course responsible person: Kjetil Korsnes E-mail address: [email protected] Course evaluation: Midterm evaluation (dialogue meeting between teaching staff and students). Written, web-based final evaluation. Offered as a free-standing course: Students who have this course compulsory in their programme of study. Others as far as they are qualified. Recommended previous knowledge: AK203F Farming of Salmonids, AK204F Production of Marine Fish, BI217F Microbiology, BI124F Cellbiologi, BI205F Fish Physiology Assessment methods and criteria: Paper. Counts 30 % of final grade. Grade A-F Oral examination. Counts 70 % of final grade. Grade A-F. Recommended or required reading:

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Studieplaner Poppe, T. T. (red). 1999. Fiskehelse og fiskesykdommer, Universitetsforlaget. Døving, K., Reimers, E. (red). 1992. Fiskens fysiologi, John Grieg Forlag AS, s.182-195. Some articles. Overlapping courses: The following courses gives reduction in ECTS-points: AK205F-008 Fiskehelse - semesteroppgave, 10 ECTS-credits AK205F-009 Fiskehelse - muntlig eksamen, 7 ECTS-credits

Språk/Language:

Aquaculture Practice and Principles - AK303F ECTS Credits: 10 Level of course: Master Level Study start: Autumn 2010 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Mark Darryn Powell E-mail address: [email protected] Course contents: Understanding of the principles of water quality mangement, culture of different fish species and types, culture of invertebrates, system design and construction, essentials of nutrition, reproduction, flesh quality health and welfare and environmental impact. Offered as a free-standing course: Students at Master and PhD level Prerequisites: None Recommended previous knowledge: None Learning activities and teaching methods: Lectures and group work autumn 2010: Wednesday and Thursday week 34 (Introductory week) Wednesday, Thursday and Friday week 38 Wednesday, Thursday and Friday week 41 Wednesday, Thursday and Friday week 45 Assessment methods and criteria: Portfolio (40%): 2 assignments worth 20% each Final exam worth 60% Recommended or required reading: Lucas, JS and Southgate, PC 2003. Aquaculture. Farming aquatic animals and plants. Blackwell Publishing Co. ISBN 0-85238-222-7 Pillay, TVR. 1990. Aquaculture. Principles and practices. Blackwell science Ltd. ISBN 0-85238-202-2 Timmons, M.B et al. 2001. Recirculating aquaculture systems. Cayuga Aqua Ventures ISBN0-9712646-0-0 Leknang%6%6%6%6jquaculture technology%6%6%6%6%6%6%6%6.. Beveridge, M.1996. Cage aquaculture. Blackwell science Ltd ISBN 0-85238-235-9 Overlapping courses: The following courses gives reduction in ECTS-points: AK303F-001 Akvakultur - oppgaver, 10 ECTS-credits AK303F-002 Akvakultur - hjemmeeksamen, 6 ECTS-credits

Språk/Language:

Aquaculture Nutrition - AK320F ECTS Credits: 10 Level of course: Master Level Study start: Autumn 2010 Study place: -

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Studieplaner Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Kiron Viswanath E-mail address: [email protected] Costs: None. Course evaluation: Students shall evaluate the course midway (dialogue meeting with report) and at the end (final electronic evaluation in accordance with the college quality assurance system). The feedbacks from these evaluations will be basis for future syllabus revision and course planning. Course contents: Importance of nutrition in aquaculture and approaches to understand feed and nutrient requirements Aquatic feeds: formulation and technology Intermediary metabolism and nutritional energetics Nutritional requirements signifying the relevance of proteins, lipids, carbohydrates, vitamins and minerals Nutritional pathology and role of nutrients in fish health Comparative nutrition of selected farmed species Advances in aquaculture nutrition: feeds and quality of farmed fish, broodstock and larval feeds, environmental friendly feeds and special feeds Offered as a free-standing course: This course is for the Master's students at the Faculty of Biosciences and Aquaculture, but Doctoral or Master's students from other institutions can also join with prior approval from the Faculty. Prerequisites:

Recommended previous knowledge: This course is built upon the foundation course AK220F Fish Nutrition and Feeding offered at the Bachelor's level or similar recognized courses. Learning activities and teaching methods: There will be four blocks of teaching during the semester. Each block extends over 2 days and includes approximately 11 hours of teaching. In addition there will be laboratory classes (of approximately 16 hours). Thursday and Friday week 37 Thursday and Friday week 40 Thursday and Friday week 42 Thursday and Friday week 44 Assessment methods and criteria: Written examination for 4 hours carrying 70 % of the credit Two written assignments which will have 30 % of the credit Both parts of the examination have to be completed in English. Recommended or required reading: Obligatory literature Fish Nutrition (Third Edition; Edited by Halver, J.E. and Hardy R.W. Academic Press, ISBN 0-12-319652-3) Fiskeernæring ( Red. Waagbø, R., Espe, M., Hamre, K. og Lie, Ø. Kystnæringen Forlag & bokklubb AS, ISBN 82-7595-020) Additional literature Nutrition and Feeding of Fish and Crustaceans ( Edited by Guillaume, J., Kaushik, S., Bergot, P. and Métailler, R. Praxis Publishing, ISBN 1-85233-241-7) Nutrient Requirements and Feeding of Finfish for Aquaculture (Edited by Webster, C.D., Lim, C. CABI Publishing, ISBN 0-85199-519-5) Supplementary literature will be provided Overlapping courses: The following courses gives reduction in ECTS-points: AK320F-001 Akvakulturernæring - innleveringsoppgave, 10 ECTS-credits AK320F-002 Akvakulturernæring - skriftlig skoleeksamen, 7 ECTS-credits

Språk/Language:

Biochemistry and Nutrition - BI209F ECTS Credits: 10 Level of course: Intermediate Level Study start: Autumn 2010 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English

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Studieplaner Course responsible person: Åge Eirik Mohus E-mail address: [email protected] Costs: For recommended textbooks only Course evaluation: Midterm evaluation (dialogue meeting between lecturer and students). Written, web-based final evaluation. Course contents: Enzymes, ATP and metabolic pathways. Digestion and absorption. Carbohydrate, energy metabolism and regulation. Lipids in nutrition. Diet and health. Protein in nutrition. Vitamins and minerals. Enzym kinetics and nutritional analysis in lab. Prerequisites: BI124F Cellbiology, KJ100F Fundamentals of chemistry - or equivalent course. Learning activities and teaching methods: Lectures, 4-6 hours weekly Seminars with exercises, 1-2 hours some weeks Exercises in lab, 3 gatherings for about 2 hours each Assessment methods and criteria: Written exam: counts 100 % of final grade. Grade A-F Portfolio: Compulsory lab reports. Pass/not pass Recommended or required reading: Bender, D.A. "Introduction to Nutrition and Metabolism", Taylor & Francis Inc, New York 2008; chap. 1, 2, 3, 4, 5, (6), (8), 9, (10), (11). Horton, H; Moran, L.A; Gray Scimgeour, K; Perry, M.D. & Rawn, J.D. "Principles of Biochemistry", Pearson Education, London 2006; chap. (1), 7, (10), 11, 12, (13), (14), (16), (17). Supplements and support: Brody, T. "Nutritional Biochemistry", Academic Press, London 1999. Eastwood, M. "Principles of Human Nutrition", Blackwell Science, Oxford 2003. Drevon, C.A, et al. "Mat og medisin : nordisk lærebok i generell og klinisk ernæring", Kristiansand 2007. Stipanuk, M.H. "Biochemical, Physiological & Molecular Aspects of Human Nutrition", Saunders (W.B.) Co Ltd, London 2006. Campbell, N.A. & Reece, J.B. "Biology", Pearson - Benjamin Cummings, San Francisco 2008. Overlapping courses: The following courses gives reduction in ECTS-points: BI209F-001 Biokjemi og ernæring - laboratoriearbeid, 10 ECTS-credits BI209F-002 Biokjemi og ernæring - skoleeksamen, 8 ECTS-credits

Språk/Language:

Molecular Cell Biology - BI210F ECTS Credits: 10 Level of course: Intermediate Level Study start: Autumn 2010 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Monica Fengsrud Brinchmann E-mail address: [email protected] Course evaluation: Midterm evaluation (dialogue meeting between teaching staff and students). Written, web-based final evaluation. Course contents: The course addresses eukaryotic cell biology topics from a molecular biology view point. Key issues are 1. 2. 3. 4. 5. 6. 7.

Storage and expression of genetic information Structure and function of cellular membrane systems. Cell-cell interactions and extra cellular matrix. Cytoskeleton and cellular movement Cell cycle Cell signalling Development

Recommended previous knowledge: BI124F Cell Biology or equivalent. Learning activities and teaching methods: Lectures: 28 hours

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Studieplaner Seminars: 10 hours Lab exercises: 2 exercises x 6 hours Assessment methods and criteria: Written exam, 4 hours. Counts 100% of the finale grade Lab exercises. Counts 0% of the finale grade. Pass/not pass Recommended or required reading: Julian Lewis, Martin Raff, Keith Roberts, Alexander Johnson, Peter Walter, Bruce Alberts ( nov 2007) : Molecular Biology of the Cell. Fifth Edition. ISBN: 9780815341062 ISBN-10: 0815341067 Publisher: Garland Science Chapters 1, 4, 5, 6, 7, 8, 9, 10, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25. Overlapping courses: The following courses gives reduction in ECTS-points: BI210F-001 Molekylær cellebiologi, 10 ECTS-credits BI210F-002 Molekylær cellebiologi, 2 ECTS-credits

Språk/Language:

Scientific Communication and Research Methods - BI300F ECTS Credits: 10 Level of course: Master Level Study start: Autumn 2010 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Nils T. Hagen E-mail address: [email protected] Course evaluation: Midterm evaluation (dialogue meeting between lecturer and students). Written, web-based final evaluation. Course contents: This course offers practical training in basic scientific methods and communication skills for master students in aquaculture. It covers introductory experimental design and data analysis, and emphasizes development of skills for efficient retrival, critical review and management of academic information. Offered as a free-standing course: The course is reserved for students that are taking their master's degree at the Faculty of Biosciences and Aquaculture at Bodø University College. Prerequisites: All MSc students at Faculty of Biosciences and Aquaculture, Bodø University College, and students qualified for admission to MSc in Aquaculture. Learning activities and teaching methods: Lectures and group work autumn 2010: Wednesday and Thursday week 34 (Introductory week) Wednesday, Thursday and Friday week 38 Wednesday, Thursday and Friday week 41 Wednesday, Thursday and Friday week 45 Assessment methods and criteria: Home examination, counts 100 % of the final grade. Coursework requirement: Individual oral presentation. Pass/not pass. Recommended or required reading: Davis, M. 2005. Scientific papers and presentations. 2nd edition. Academic Press. Sall, J., L. Criegthon & Lehman 2005. JMP Start Statistics (Fourth ed.). SAS Press Series. Zar, J.H. 20x0. Biostatistical analysis. Fifth edition. Pearson International Edition. Overlapping courses: The following courses gives reduction in ECTS-points: BI300F-001 Metodekurs for masterstudenter, 10 ECTS-credits BI300F-002 Metodekurs for masterstudenter, 2 ECTS-credits

Språk/Language:

Quality Variation in Seafood - KV300F ECTS Credits: 10

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Studieplaner Level of course: Master Level Study start: Autumn 2010 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: Norwegian Course responsible person: Marit Bjørnevik E-mail address: [email protected] Course evaluation: Oral evaluation with written report at mid-semester, electronic evaluation at the end of the semester. Course contents: The course will provide knowledge about the biochemical composition of fish muscles with focus on proteins and lipids. Effects of season, maturation, feed and starvation. Post mortal changes. Ice and freeze storage. Factors influencing the functional properties of fish muscle as liquid loss, texture and fillet gaping. The course will focus both on wild and farmed fish. The four laboratory exercises goes through important part of the syllabus as: Chemical composition; Liquid loss and electrophoreses; Texture and color measurments; Sensorical analysis and freshness evaluation. Offered as a free-standing course: The course is reserved for students who are taking their master's degree at the Faculty of Bioscenses and Aquaculture at Bodø University College, as well as master or PhD students from other similar institutions. The limit of attending students is twelve students, this limitation is set by the practical component of the course. Prerequisites: All students accepted as a Master student at Bodø University College or other similar institutions is qualified to attend the course. Knowledge in chemistry and biochemistry is necessary. Learning activities and teaching methods: Teaching in 4 blocks per semester with approximately 13 hours of teaching over two days each time. In each block there will be obligatory laboratory work with written reports. Oral presentation together with written reports will constuitute the porto folio evaluation. Assessment methods and criteria: Written exam (4 hours) evaluated by external and internal evaluator. Counts 60% of final character. Portfolio evaluated by internal evaluators. Counts 40% of final character. Recommended or required reading: Selection from (to be handed out): Fennema: Food Chemistry Bremner: Safety and quality issues in fish processing. Conell: Control of fish quality Handed out stencils, laboratory manual Overlapping courses: The following courses gives reduction in ECTS-points: BI320F Fiskemuskelkvalitet og biokjemi, 5 ECTS-credits KV300F-003 000 Kvalitetsvariasjoner i marint råstoff, 10 ECTS-credits

Språk/Language:

Fish Nutrition and Feeding - AK220F ECTS Credits: 10 Level of course: Intermediate Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: Norwegian Course responsible person: Ørjan Hagen E-mail address: [email protected] Overlapping courses: The following courses gives reduction in ECTS-points: AK220F-003 Fiskeernæring og foring - Skriftlig skoleeksamen, 10 ECTS-credits AK220F-004 Fiskeernæring og foring - Mappe (skriftlige prøver), 3 ECTS-credits

Språk/Language:

Master's Thesis in Aquaculture - AK306F ECTS Credits: 60

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Studieplaner Level of course: Master Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Christel Solberg E-mail address: [email protected] Course evaluation: The students will evaluate the course twice, 1) a midterm dialogue-based evaluation and 2) a final, web-based written evaluation. This final evaluation will help improve the course next year. Course contents: The master's thesis should primarily be empirical and be relevant to the objectives of the master's programme. Both quantitative and qualitative methods may be used. The master's thesis will normally be an individual work, although it is also possible for two or several students to cooperate. However, the thesis must be handed in individually. All master's students must in cooperation with their main supervisor write a thorough project description, in which the theoretical and empirical background of the project, the problematics, method, data processing or method of analysis, ethical assessments, time frame and budget are accounted for. The outline should contain relevant attachments and references, and must be submitted by the end of the first semester for full-time students (i.e., 1st December for students starting in the autumn term / 2nd May for students starting in the spring term). Offered as a free-standing course: Students admitted to the Master's programme in Aquaculture. Prerequisites: Bachelor's degree or equivalent. Recommended previous knowledge: Based on the theoretical topics of the master's programme. Learning activities and teaching methods: The master's thesis is an individual scientific work, but you are entitled to guidance, individually or in groups. Further information about deadlines and forms are available in Classfronter. Assessment methods and criteria: All courses specified in the master's programme contract/agreement must be completed and passed before students can take the final examination. In special cases examinations of special curriculum courses relevant for the master's thesis can be arranged the same day as the final oral examination. The master's thesis is to be handed in by the end of the fourth semester for full-time students. Deadlines are 15th May in the spring semester / 15th November in the autumn semester). If the student fails to meet this deadline, he/she has to apply for an extension. Further information is to be found in the Supplementary Rules for Master's Degree Programmes at FBA. Trial lecture (obligatory work): After the thesis is handed in, the student will give a 30-minute public lecture presenting his/her thesis. This presentation is a compulsory assignment, and is assessed by pass/fail. An English as well as a Norwegian abstract of the thesis (for Norwegian students) is to be sent out electronically together with the invitation to the trial lecture. Oral examination: The oral examination consists of two parts: In part one the students gives a presentation of his/her thesis to the exam committee, i.e. the previous public lecture is held for the exam committee. In the second part, the student defends his/her thesis to the committee. Marking: The final mark is given as a joint assessment of the thesis and the final oral examination. No separate marks are given for the master's thesis and the oral examination. The mark is set after the oral examination and the thesis is to be given most weight. The master's thesis and the final oral examination are assessed by a committee consisting of three members: One external examiner, leader of the committee. The main supervisor An internal/external examiner (He or she cannot be part of the student's supervisor committee). By disagreement, the external examiner has the decision-making authority. Recommended or required reading: Literature is to be specified as a part of the thesis. The project description should contain a preliminary bibliography of the scientific literature the student will be using as a background for his/her thesis. The literature will normally define the context of the thesis. Overlapping courses: The following courses gives reduction in ECTS-points: AK306F-004 Masteroppgave i havbruk - oppgave, 60 ECTS-credits Emnebeskrivelse er ikke publisert Emnebeskrivelse er ikke publisert

Språk/Language:

Aquatic Animal Health - AK310F ECTS Credits: 10 Level of course: Master Level

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Studieplaner Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Kiron Viswanath E-mail address: [email protected] Course evaluation: Every semester there is an oral mid-term evaluation (dialogue meeting with report) and an electronic final evaluation in accordance with the college’s quality assurance system. Response from these evaluations will be the basis for further changes. Course contents: Overview of major bacterial, viral and parasitic diseases of fish. Overview of diseases of other farmed aquatic species. Pathology. Fish immunology. Disease treatment and control – vaccines, prophylaxis and therapy. Tools for pathogen detection. Offered as a free-standing course: This course is intended for the students in the Master of Science programme in Aquaculture at the Faculty. It is also open to Master’s and Doctoral students from other institutions. Recommended previous knowledge: AK205F Fish health and BI217F Microbiology or related subjects. Learning activities and teaching methods: Lectures and lab (Thursdays and Fridays - four blocks during the spring. Time schedule will be announced later. Assessment methods and criteria: Written examination (4h) that carries 70 % of the total grade. Hand-in assignment (6 weeks) that carries 30 % to the total grade. Oral presentation of this assignment is obligatory, but will not be graded. Both the examinations should be written in English, and will be given grades (A-F). Recommended or required reading: Obligatory literature Current Trends in the Study of Bacterial and Viral Fish and Shrimp Diseases (Molecular Aspects of Fish and Marine Biology). Edited by Ka Yin Leung and Leung Ka Yin. World Scientific Publishing Company. ISBN-10: 9812387498, ISBN-13: 978-9812387493) Additional literature Systemic pathology of Fish. 2nd edition; Edited by H.W. Ferguson. Scotian Press. ISBN-978-0-9553037-0-8) The Fish Immune System: Organism, Pathogen, and Environment (Volume 15: Fish Physiology Series) Edited by George Iwama and Teruyuki Nakanishi. Academic Press. ISBN-10: 0123504392, ISBN-13: 978-0123504395). Supplementary material will be provided Overlapping courses: The following courses gives reduction in ECTS-points: AK310F-001 Helse hos akvatiske oppdrettsorganismer - innleveringsoppgave, 10 ECTS-credits AK310F-002 Helse hos akvatiske oppdrettsorganismer - skoleeksamen, 7 ECTS-credits

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Marine Biology - BI206F ECTS Credits: 10 Level of course: Intermediate Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Ketil Eiane E-mail address: [email protected] Costs: Up to 3000 NOK. Course evaluation: Each semester at least one oral evaluation is performed (based on a dialog between student representatives and course coordinator) and a final electronic evaluation. Course contents:

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Studieplaner The course provides an introduction to: the marine environment, important groups of organisms (such as plankton, benthos, invertebrates and vertebrates), ecology of organisms, and use of basic sampling equipment. Offered as a free-standing course: Students on their second and third year of study, with a background comparable to BI123F Ecology and BI125F Biodiversity. Recommended previous knowledge: BI123F Ecology, BI125F Biodiversity or similar. Learning activities and teaching methods: Talks and seminars (totalt ca 60 h) Lab- and fieldwork ca 1 week fieldcourse in April/May Assessment methods and criteria: Reporting is mandatory and includes: Oral presentations and written reports from parts of the curriculum. A common journal based on field and lab work. Reports must be handed in and approved before final examination. Final evaluation of students is based on a final oral examination (100% of final grade). Recommended or required reading: Kaiser et al. (2005) Marine Ecology: Processes, systems, and impacts. Oxford University Press, Oxford. Overlapping courses: The following courses gives reduction in ECTS-points: BI206F-001 Marinbiologi - muntlig, 10 ECTS-credits BI206F-002 Marinbiologi - innleveringsoppgave, 2 ECTS-credits

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Molecular Ecology - BI214F ECTS Credits: 10 Level of course: Intermediate Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Truls Moum E-mail address: [email protected] Course contents: The course includes the following topics: Basic molecular biology and the genomic organization of animals Molecular identification of individuals, populations and species, and molecular sex determination Theory and analytical techniques for using molecular markers in behavioural ecology, population genetics, phylogeography, conservation biology and phylogeny Molecular and adaptive variation Microbial ecology Gentically modified organisms (GMOs) The laboratory course gives an introduction to DNA isolation, PCR, cloning procedures, DNA sequencing and bioinformatics. Offered as a free-standing course: All Recommended previous knowledge: Knowledge in Molecular Cell Biology (equivalent to BI210F) and in Genetics and Evolution (equivalent to BI122F) Learning activities and teaching methods: The course includes lectures, seminars, and laboratory exercises. Summaries of lectures and other relevant information will be posted at Class Fronter. Please note that participation at the seminars is crucial for the proper understanding of contents of the course. Assessment methods and criteria: Written examination (4 hours), counts 100 % of the final grade. Laboratory exercises (pass/not pass). Recommended or required reading: Textbook: An Introduction to Molecular Ecology Second edition (2007) Trevor Beebee and Graham Rowe. Oxford University Press.

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Studieplaner Overlapping courses: The following courses gives reduction in ECTS-points: BI214F-001 Molekylær økologi labøvelser, 10 ECTS-credits BI214F-002 Molekylær økologi -skoleeksamen, 8 ECTS-credits

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Evolutionary Behavioural Ecology - BI216F ECTS Credits: 10 Level of course: Intermediate Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Jarle Tryti Nordeide E-mail address: [email protected] Costs: None. Course evaluation: The Faculty's standard evaluation methods are used. Course contents: The history of evolution and behaviour, genetics and evolution, foraging and antipredator behaviour, social behaviour and organisation, sexual behaviour, sexual selection, communication, mating systems parental care, cooperation between individuals, individual differences, and choosing where to live. Offered as a free-standing course: All, but see "Recommended previous knowledge" below. Prerequisites: None. Recommended previous knowledge: BI122F Genetics and evolution, BI123F Ecology, BI124F Cell biology and Biochemistry, BI125F Biodiversity. Learning activities and teaching methods: Lectures and seminars. Assessment methods and criteria: Presentation - Oral examination in part of the syllabus (Dawkins). Mark: Passed/Not passed. This is also to prepare the students for the final oral examination. Final oral examination - Marks in letters (A - F). Recommended or required reading: Alcock, J. 2009. Animal Behavior 9 th. edition. Sinauer Ass. Inc., Sunderland, Massachusetts. ISBN 978-0-87893-225-2. Chapter 1, parts of 3 (p. 68-73 &76-87), parts of 4 (p. 141-147), parts of 6 (190-217), parts of 8 (p. 261-283), 9, 10, 11, 12, 13, og 14. Dawkins, R. 1978. The Selfish Gene. Oxford University Press, Oxford, Chapters 1,2,3,4, and 7,8,9,10,11. Overlapping courses: The following courses gives reduction in ECTS-points: BI216F-001 Evolusjonær atferdsøkologi - muntlig eksamen, 10 ECTS-credits BI216F-002 Evolusjonær atferdsøkologi - presentasjon, 3 ECTS-credits

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Aquatic Ecophysiology - BI303F ECTS Credits: 10 Level of course: Master Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Mark Darryn Powell E-mail address: [email protected] Course evaluation: Midterm evaluation (dialogue meeting between lecturer and students). Written, web-based final evaluation.

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Studieplaner Course contents: Osmotic regulation and excretion, food and feeding, digestion and metabolism, nervous and endocrine control, sensory processes, respiration and circulation, temperature regulation. Offered as a free-standing course: To attend this course you must be qualified for the MSc in Aquaculture/Marine Ecology. Priority for students having this course as an obligatory part of their study programme. Other students can join the class if there is free capacity. Prerequisites: Bachelor's degree or equivalent. Recommended previous knowledge: Necessery previous knowledge in physiology corresponding to BI105F Animal physiology (10 sp) and BI205F Fish physiology (10 sp). Learning activities and teaching methods: Lectures, colloqium and laboratory practice: Time schedule to be announced. Assessment methods and criteria: Oral examination counting 50% of the final grade. Portifolio counting 50% of the final grade. The portifoilio consist of following parts: Written assignment with oral presentation of a given topic Laboratory report from own laboratory practice Participation and leading in class discussions Both parts of the exam must be passed before the course is approved Recommended or required reading: Eckert, Randall, Burggren and French, 2002: Animal physiology, mechanism and adaptations. ISBN: 0-7167-3863-5 Evans, D.H. and Claibourne, J.B. (2006). The physiology of fishes. CRC Press Inc. Boca Raton USA. A collections of articles handed out in the beginning of the semester Overlapping courses: The following courses gives reduction in ECTS-points: BI303F-005 Akvatisk økofysiologi - muntlig eksamen, 10 ECTS-credits BI303F-006 Akvatisk økofysiologi - mappevurdering, 5 ECTS-credits

Språk/Language:

Reproductive Biology and Genetics in Fish - BI304F ECTS Credits: 10 Level of course: Master Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Igor Szczepan Babiak E-mail address: [email protected] Course evaluation: Mid-term oral evaluation with written report, electronic evaluation at the end of the semester. Course contents: Modes and strategies of reproduction. Genetic sex determination. Sex differentiation. Gonadal development. Gamete maturation and its endocrine control. Gamete anatomy and physiology. Modes of natural reproduction. Controlled maturation and spawning. Handling of gametes. Fertilization and its mechanisms. Embryonic development. Sex reversal. Chromosome set manipulations: polyploidization, gynogenesis and androgenesis. Control of phenotypic sex: Production of monosex stocks. Biotechnology of reproduction: Manipulation of primordial germ cells and transgenesis. Offered as a free-standing course: Students accepted for the Master's programme in Aquaculture. Prerequisites: Bachelor's programme in e.g. Biology, Aquaculture, Seafood Quality. Recommended previous knowledge: BI210F Molecular Cell Biology Learning activities and teaching methods:

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Studieplaner Lectures, laboratory work and group work. Thursday and Fridays - four blocks during the spring. Time schedule will be announced later. Assessment methods and criteria: Oral Examination, counts 70% of the final mark. Portfolio Assessment, counts 30% of the final mark. Recommended or required reading: Books • Reproductive Biotechnology in Finfish Aquaculture. 2001. Edited by C.-S. Lee, and E.M. Donaldson, Elsevier. • Handbook of Fish Biology and Fisheries. 2002. (Volume I) Fish Biology. Edited By: P. J. B. Hart and J. D. Reynolds, Blackwell Publishing. • Kunz, YW. 2004. Developmental Biology of Teleost Fishes. Springer-Verlag. • Gilbert, SF. Developmental Biology. 7th or 8th edition. Sinauer Associates. • Kapoor BG, Khanna B. Ichthyology Handbook. Springer-Verlag, 2004. Review articles • Devlin R.H., Nagahama Y. 2002. Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture 208:191-364. • Bobbe J, Labbe C. 2010. Egg and sperm quality in fish. General and Comparative Endocrinology 165: 535-548. • Falcón J,Migaud H, Muñoz-Cueto JA, Carrillo M. Current knowledge on the melatonin system in teleost fish. General and Comparative Endocrinology 165:469-482. • Lubzens E, Young G, Bobe J, Cerda J. 2010. Oogenesis in teleosts: How fish eggs are formed. General and Comparative Endocrinology 165:367-389. • Mylonas CC, Fostier A, Zanuy S. 2010. Broodstock management and hormonal manipulations of fish reproduction. General and Comparative Endocrinology 165: 516534. • Schulz RW, de França LR, Lareyre JJ, LeGrac F, Chiarini-Garcia H, Nobrega RH, Miura T. 2010. Spermatogenesis in fish. General and Comparative Endocrinology 165:390-411. • Zohar Y, Muñoz-Cueto JA, Elizur A, Kah O. Neuroendocrinology of reproduction in teleost fish. General and Comparative Endocrinology 165:438-455. Språk/Language:

Aquatic Genomics and Bioinformatics - BI311F ECTS Credits: 10 Level of course: Master Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Jorge Manuel de Oliveria Fernandes E-mail address: [email protected] Course evaluation: Midterm evaluation (dialogue meeting between lecturer and students). Written, web-based final evaluation. Course contents: Topics covered in this course include basic DNA sequence analysis, multiple sequence alignments, genome annotation, phylogenetic footprinting, synteny analysis, identification of novel genes by suppression subtractive hybridisation, expression profiling by microarray technology, proteomics, genome-wide knockdown techniques and construction of phylogenetic trees. Offered as a free-standing course: Students enrolled in the MSc programme in Aquaculture. Prerequisites: None required. Recommended previous knowledge: Basic computational skills and some knowledge of molecular biology and biochemistry are advantageous for successful completion of this course. Learning activities and teaching methods: Block teaching Assessment methods and criteria: Final written exam (50 %) One lab report to be submitted before the end of term (30 %) One oral presentation during term (20 %) Recommended or required reading: Campbell AM and Heyer LJ (2006). Discovering Genomics, Proteomics and Bioinformatics. Benjamin Cummings (2nd ed.). ISBN 0805382194. Hunt S and Livesey R (2000). Functional Genomics: A Practical Approach. Oxford University Press, USA (1st ed.). ISBN 019963775X. Xiong J (2006). Essential Bioinformatics. Cambridge University Press. ISBN 0521600820. Brown T (2006). Genomes 3. Garland Publishing Inc,US. ISBN 0815341385 Overlapping courses:

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Studieplaner The following courses gives reduction in ECTS-points: BI311F-001 Akvagenomikk og bioinformatikk - skoleeksamen, 10 ECTS-credits BI311F-002 Akvagenomikk og bioinformatikk - laboratoriearbeid, 3 ECTS-credits BI311F-003 Akvagenomikk og bioinformatikk - muntlig presentasjon, 2 ECTS-credits

Språk/Language:

Chromatography - KJ270F ECTS Credits: 10 Level of course: Intermediate Level Study start: Spring 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture Language of instruction: English Course responsible person: Einar Skarstad Egeland E-mail address: [email protected] Costs: None, except book(s). Course evaluation: Midterm evaluation (dialogue meeting between teaching staff and students). Written, web-based final evaluation. Course contents: Most chromatographic methods, with focus on gas chromatography and high performance liquid chromatography. Offered as a free-standing course: All Prerequisites: KJ102F Organic chemistry 1, KJ150F/KJ200F Organic chemistry or equivalent Learning activities and teaching methods: 30 hours with lectures + 60 hours with laboratory work (exercises and project work). Assessment methods and criteria: Oral examination (40% of the grade) Four laboratory exercises (together 60% of the grade) All parts must be accepted. If one or more laboratory exercises is given the mark "F" or the student want to improve the grade, the whole exercise must be performed again. Recommended or required reading: The following topics will be covered in detail: Thin layer chromatography, gas chromatography, high performance liquid chromatography, various types of stationary phases for chromatography, various detectors for instrumental methods. Other topics will be presented only briefly. The lecture will follow the book by A. Braithwaite and F. J. Smith: Chromatographic methods, 5th ed., Kluwer Academic Publ., Dordrecht 1996, pages 1-81, 117-126, 141-156, 165-247, 258-331, 338-362 and 339-425. Alternative textbooks may be used. Overlapping courses: The following courses gives reduction in ECTS-points: KJ270F-001 Teoretisk kromatografi - muntlig eksamen, 10 ECTS-credits KJ270F-002 Manuell kromatografi - laboratorieøvelser, 1 ECTS-credits KJ270F-003 Gasskromatografi - laboratorieøvelser, 1 ECTS-credits KJ270F-004 Høypresisjonsvæskekromatografi - laboratorieøvelser, 2 ECTS-credits KJ270F-005 Prosjektarbeid, 2 ECTS-credits Emnebeskrivelse er ikke publisert

2nd year of study Språk/Language:

Fish Muscle Development and Growth - KV301F ECTS Credits: 10 Level of course: Master Level Study start: Autumn 2011 Study place: Faculty responsible: Faculty of Biosciences and Aquaculture

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Studieplaner Language of instruction: English Course responsible person: Ørjan Hagen E-mail address: [email protected] Course evaluation: Mid-term oral evaluation with written report, electronic evaluation at the end of the semester according to UIN's policy. Course contents: Organisation of the myotomal structure of fish Biochemistry of the myofibres and the connective tissue Introduction to how the myotomal muscle develops during different life stages Focus on the different stages of the myogenesis Hormone and genetic regulation of muscle growth Impact of temperature, light setting and feed and feeding regimes How does the biochemistry and structure of the muscle affect the fillet quality Learning outcomes: Give the students more detailed knowledge about the structure, development and growth pattern of the fish muscle during the life cycle (embryonic stage to adulthood). The students will also be given an insight in how different muscle components (muscle fibres, connective tissue, other structural components and the proteolytic system) interacts and how this can affect the quality of the muscle and how it can influence the process characteristics of the food as food. The genetic mechanism having an impact on the differentiation and growth of the muscle, differences between populations and in aquaculture will be discussed. In the practical exercises students will be familiar with different techniques often used in muscle growth studies. Offered as a free-standing course: The course in intended for students admitted on the MSc or PhD program at FBA, as well as MSc- and PhD students from other similar institutions.

Prerequisites: The candidate has to be accepted as MSc- or PhD students at FBA or at a similar institution. Recommended previous knowledge: It is an advantage if students are familiar with fish muscle physiology. Learning activities and teaching methods: Teaching is organised into 4 blocks during the term, one block every 3-3th week. Each block consist of 2 days with 6 teaching hours each day. Practical laboratory work is included in the block teaching. Assessment methods and criteria: Written school exam (50%) and written assignment (50 %). Recommended or required reading: Relevant scientific papers. The list is updated according to recent published relevant publication. 1. Barral, J.M., Epstein, H.F (1999). Protein machines and self assembly in muscle organization. BioEssays 21, Issue 10, Pages: 813-823 2. Caballero, M. J., Betancor, M., Escrig, J. C., Montero, D., Espinosa de sol Monteros, A., Castro, P., Ginés, R., Izquierdo, M. (2009). Post mortem changes produced in the muscle of sea bream (Sparus aurata) during ice storage. Aquaculture, 291, 210-216. 3. Devoto, S.H., Melancon, E., Eisen, J. S., and Westerfield, M. (1996). Identification of separate slow and fast muscle precursors in vivo, prior to somite formation. Dev. 122, 3371-3380. 4. Glass D.J. (2005). Skeletal muscle hypertrophy and atrophy signalling pathways. Int. J. Biochem. Cell Biol. 37, 1974-1984. 5. Hagen, Ø., Solberg, C., Sirnes, E., Johnston, I. A. (2007). Biochemical and structural factors contributing to seasonal variation in the texture of farmed Atlantic halibut (Hippoglossus hippoglossus L.) flesh. J. Agric. Food Chem. 55: 5803-5808. 6. Hagen, Ø., Vieira, V. L. A., Solberg, S., Johnston, I. A. (2008). Myotube production in fast myotomal muscle is switched-off at shorter body lengths in male than female Atlantic halibut (Hippoglossus hippoglossus L) resulting in a lower final fibre number. J. Fish Biol. 73: 139-152. 7. Johnston, I.A. (1999). Muscle development and growth: potential implications for flesh quality in fish. Aqua. 177, 99-115. 8. Johnston, I.A. (2001). Implications of muscle growth patterns for the colour and texture of fish flesh. In. Farmed Fish Quality. (eds.) S. Kestin and P. Warris, pp. 13-30. Blackwells Scientific Oxford. 9. Johnston , I.A., Manthri S., Smart, A., Campbell, P., Nickell, D., & Alderson, R. (2003). Plasticity of muscle fibre number in seawater stages of Atlantic salmon in response to photoperiod manipulation.J. Exp. Biol. 206, 3425-3435. 10. Johnston , I.A., Hall, T.E. & Fernàndez, D.A. (2003). Genes regulating the growth of myotomal muscle in teleost fish. In. Aquatic Genomics - Steps Toward a Great Future. ( N. Shimizu , T. Aoki, I. Hirono & F. Takashima eds.). pp 153-166. Springer-Verlag Tokyo. 11. Johnston, I.A. & Hall, T.E. (2004). Mechanisms of muscle development and responses to temperature change in fish larvae. Pp. 113-144. In J.J. Govoni (Ed). The development of form and function in fishes and the question of larval adaptation. American Fisheries Society Symp. 40: Bethesda, Maryland. 12. Johnston, I.A., Abercromby, M., Vieira, V.L.A, Sigursteindóttir, R.J., Kristjánsson, B.K., Sibthorpe, D., Skúlason, S. (2004). Rapid evolution of muscle fibre number in post-glacial populations of Arctic charr Salvelinus alpinus. J. Exp. Biol. 207, 4343-4360. 13. Johnston, I.A. (2006). Environment and plasticity of myogenesis in teleost fish. J. Exp. Biol. 209, 2249-2264. (Available at http://www.standrews.ac.uk/~fmrg/papers/allpubs.html) 14. Johnston, I.A., Macqueen, D.J. & Watabe, S. (2008). Molecular biotechnology of development and growth in fish muscle. In. Fisheries for Global Welfare and Environment, 5th World Fisheries Congress 2008. (ed. K. Tsukamoto, T. Takeuchi, T.D. Beard jr. & M. J. Kaiser) pp. 241-262. (Available at http://www.standrews.ac.uk/~fmrg/papers/allpubs.html)

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Studieplaner 15. Koumas, J.T.M., Akster, H. A. (1995). Myogeic cells in development and growth of fish. Comp. Biochem. Physiol. 110. 3-20. 16. Li, X., Bickerdick., R., Lindsay, E., Campbell, P., Nickell, D., Dingwall, A., Johnston, I.A. (2005). Hydroxylysyl Pyridinoline Cross-links Concentration Affects the Textural Properties of Fresh and Smoked Atlantic Salmon (Salmo salar L.) Flesh. J. Agric. Food Chem. 2005, 53, 6844-6850. 17. Lopez-Albors. O., Ayala, M. D., Gil, F., Garcia-Alcàzar. A., Abellan, E., Latorre, R., Ramirez-Zarzosa, G., Vázquez. J. M. (2003). Early temperature affects on muscle growth dynamics and histochemical profile of muscle fibres of sea bass Dicentrarchus labrax L., during larval and juvenile stages. Aqua. 220. 1-22 18. Luther, P. K., Munro, P. M. G., Squire, J. M. (1995). Muscle Ultrastructure in the Teleost Fish. Micron, 26 (5). 431-459. 19. Macqueen, D.J., Robb, D.H.F., Olsen, T., Melstveit, L., Paxton, C.G.M., Johnston, I.A. (2008). Temperature until the ‘eyed stage' of embryogenesis programmes the growth trajectory and muscle phenotype of adult Atlantic salmon. Biol. Lett. 4, 294-298. (Available at http://www.st-andrews.ac.uk/~fmrg/papers/allpubs.html 20. Macqueen, D.J., Kristjánsson, B.K., Johnston, I.A. (2010). Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism. Physiol. Genomics 42, 134-148. (Available at http://www.st-andrews.ac.uk/~fmrg/papers/allpubs.html) 21. Medeiros E.F., Phelps M.P., Fuentes F.D., Bradley T.M. (2009). Overexpression of follistatin in trout stimulates increased muscling. Am J Physiol. Regul. Integr. Comp. Physiol. 297, R235-42. 22. Robb, D.H.F., Kestin, S.C., Warriss, P.D. and Nute, G.R. (2002). Muscle lipid content determines the eating quality of smoked and cooked Atlantic salmon (Salmo salar) Aqua. 205, Issues 3-4, 345-358. 23. Rodgers B.D., Garikipati D.K. (2008). Clinical, agricultural, and evolutionary biology of myostatin: a comparative review. Endocr. Rev. 29, 513-34 24. Rowlerson, A., Mascarello, F., Radaelli, G. and Veggetti, A. (1995). Differentiation and growth of muscle in the fish Sparus aurata (L): II. Hyperplastic and hypertrophic growth of lateral muscle from hatching to adult. J. Muscle Research and Cell Motility 16, 223-236. 25. Rowlerson, A., Veggetti, A. (2001). Cellular mechanisms of post-embryonic muscle growth in aquaculture species. In Muscle Development and Growth. (ed. I.A. Johnston). Fish Physiol. 18, pp. 103-140, Academic Press: San Diego. 26. Schiaffino S, Reggiani C. (1996). Molecular diversity of myofibrillar proteins: Gene regulation and functional significance. Physio rev 76 (2): 371-423 27. Stellabotte, F., Dobbs-McAuliffe, B., Fernández, D. A., Feng, X., Devoto, S. H. (2007). Dynamic smite cell rearrangement lead to distinct waves of myotomal growth. Dev. 134, 1253-1257. 28. Videler, J.J. (1993). The structure of the swimming apparatus: muscles. In Fish swimming. Chapman & Hall. Fish & Fisheries Series 10, 23-39. 29. Volff J.N. (2005). Genome evolution and biodiversity in teleost fish. Heredity 94, 280-294. 30. Wood, A.W., Duan, C., Bern, H.A. Insulin like growth factor signalling in fish. Int. Rew. Cyt. 243, 215 - 285. Overlapping courses: The following courses gives reduction in ECTS-points: BI320F Fiskemuskelkvalitet og biokjemi, 5 ECTS-credits KV301F-003 Fiskemuskelutvikling og - vekst - skoleeksamen, 10 ECTS-credits KV301F-004 Fiskemuskelutvikling og -vekst - mappe, 6 ECTS-credits

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