POSTER LIST ORDERED ALPHABETICALLY BY POSTER TITLE GROUPED BY THEME/TRACK THEME/TRACK: DATA EasyChair Author list number

Presenting author

Title

Theme/track assignment

Topics

APPLICATION POSTERS WITHIN DATA THEME 773

Benoît Carrères

A systems approach to explore triacylglycerol production in Neochloris oleoabundans

Data/Application poster

Application

Pravin Dudhagara

Bioinformatic Approaches Reveal Metagenomic Depiction of Indian Hot Springs Microbial Community Bioinformatics resources on EGI Federated Cloud

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Application Ecosystems

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Application Application Fundamental

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417

Ken Tominaga, Daisuke Komura and Shumpei Ishikawa

Ken Tominaga

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506

Raik Otto, Christine Sers and Ulf Leser

Raik Otto

Data/Application poster

Application Biotechnology

735

Arnaud Meng, Lucie Bittner, Stéphane Le Crom, Fabrice Not and Erwan Corre

Arnaud Meng,

Data/Application poster

Application

364

Felipe Albrecht, Markus List, Christoph Bock and Thomas Lengauer Dong-Gi Lee and Hyunjung Shin Sunghong Park, Dong-Gi Lee and Hyunjung Shin Luca Beltrame, Tony Travis, Luca Clivio, Sergio Marchini and Maurizio D'Incalci Tilo Buschmann and Leonid Bystrykh

Felipe Albrecht

Bring Your Own Data (BYOD) workshops to make life science data linkable at the source CircosVCF – Circos visualization of whole-genome sequence variations stored in VCF files Classification of digital pathological images using Virtual Adversarial Training with an effective GUI annotation system Comparing characteristic genomic variants allows reliable in-silico identification of Next-Generation sequenced Cancer Cell Line samples De novo transcriptome assembly dedicated pipeline and its specific application to non-model, marine planktonic organisms DeepBlue: Diving into Epigenomic Data

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370

Benoît Carrères, Anne Klok, Maria Suarez Diez, Lenny de Jaeger, Mark Sturme, Packo Lamers, Rene' Wijffels, Vitor Dos Santos, Peter Schaap and Dirk Martens Pravin Dudhagara, Amit Mangrola, Anjana Ghelani and Rajesh Patel Fotis Psomopoulos, Eija Korpelainen, Kimmo Mattila and Diego Scardaci Mascha Jansen, Rob Hooft, Barend Mons, Celia van Gelder, Luiz Olavo Bonino Da Silva Santos and Marco Roos Doron Levi, Elyashiv Drori and Mali Salmon-Divon

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Gokhan Ertaylan, Nadia J. T. Roumans, Roel G. Vink, Marleen Van Baak, Edwin Mariman,Ilja Arts, Theo de Kok and Michael Lenz Johannes Köster

Gokhan Ertaylan

Disease Causality Extraction from PubMed Literatures Disease Network based Drug Repositioning Distributed file systems for storage and analysis of Next-Generation Sequencing data DNA Barcodes Adapted to the Illumina Sequencing Platform Estimating real cell size distribution from cross section microscopy imaging

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Maryam Soleimani Dodaran, Pernette Verschure, Perry Moerland and Antoine van Kampen

Maryam Soleimani Dodaran

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385

Andreas Andrusch, Piotr Wojciech Dabrowski, Jeanette Klenner and Andreas Nitsche Jorge Muñoz, Yuriy S. Shmaliy and Osbaldo Vite

Andreas Andrusch

Fully reproducible data analyses with Snakemake and Bioconda Identification of candidate methylation sites predictive for resistance to tamoxifen treatment using survival analysis of the TCGA breast cancer cohort Identification of pathogen sequences in NGS datasets

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712

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Wibowo Arindrarto, Sander van der Zeeuw, Peter van 'T Hof, Wai Yi Leung, Sander Bollen, Jeroen Laros and Leon Mei Youri Hoogstrate, Alexander Senf, Jochem Bijlard,Saskia Hiltemann, David van Enckevort, Chao Zhang, Remond Fijneman, Jan-Willem Boiten, Gerrit Meijer,Andrew Stubbs, Jordi Rambla de Argila, Dylan Spalding and Sanne Abeln Junehawk Lee, Junho Kim, Minho Lee and Sangwoo Kim

Wibowo Arindrarto

Improving Confidence Masks to Estimate Genome CNAs Using SNP Array Data Integrated Tracking of Next Generation Sequencing Pipeline Metrics

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Youri Hoogstrate

Integration of EGA secure data access into Galaxy

Data/Application poster

Application ELIXIR Fundamental

Junehawk Lee

Application

Girolamo Giudice

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Davide Albanese, Paolo Fontana, Alessandro Cestaro and Claudio Donati Duong Vu and Vincent Robert Ian Harrow, Martin Romacker, Andrea Splendiani, Stefan Negru, Peter Woollard, Scott Markel, Yasmin AlamFaruque, Martin Koch, Erfan Younesi and James Malone Artaza Haydee, Manuel Corpas, John Hancock and Rafael C Jimenez John Santerre, Rick Stevens, Jim Davis and Fangfang Xia Myungjun Kim, Yonghyun Nam and Hyunjung Shin Jesse Cj van Dam, Jasper J Koeshorst, Peter J Schaap, Vitor Ap Martins Dos Santos and Maria Suares-Diez Dushyant Dudhagara, Rahul Rajpara, Jwalant Bhatt and Bharti Dave

Davide Albanese

Machine learning based genetic variant filtration for detecting low-frequency somatic mutations MAGNETO: augMented functionAl analysis throuGh proteiN intEraction neTwOrk MatchMiner - An open computational platform for matching patient-specific genomic and clinical profiles to precision cancer medicine clinical trials. MICCA 1.X: a state-of-the-art pipeline for ampliconbased metagenomic data processing. Multilevel clustering for massive biological data Ontologies Guidelines for Best Practice and a Process to Evaluate Existing Ontologies Mapping Tools

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Girolamo Giudice, Fatima Sanchez Cabo, Carlos Torroja Fungairiño and Enrique Lara Pezzi Bernd van der Veen, Ethan Cerami and James Lindsay

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Artaza Haydee

PIsCO: A Performance Indicators Framework for COllection of Biological Resource Metrics Platform Based Machine Learning for AMR Prediction algorithm for multi-layered structure of omics RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource Dushyant Dudhagara Response surface methodology and artificial neural network modeling for fluoranthene degradation using Mycobacterium litorale Christian Ruckert Sciobase: A platform for the evaluation of variants from next-generation-sequencing experiments Seonho Kim Spatial and Contextual EEG information learning for the Diagnosis of Alcoholism Tammi Vesth The Aspergillus Mine - publishing bioinformatics

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John Santerre Yonghyun Nam Jesse Cj van Dam

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Application Biotechnology Application Application

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Application Biotechnology Fundamental

Fabio Rinaldi

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Georg Summer

The Network Library: A Framework to Rapidly Integrate Network Biology Resources The THOR project: Integrating persistent identifiers such as ORCIDs in life sciences data resources Kumar Parijat Tripathi Transcriptator: a user-friendly graphical interface to functionally characterize novel transcripts and identify non-coding RNA. Jennifer Leclaire triMS5 - storing LC-IMS-MS data sets in HDF5 Parham Solaimani Using R language based bioinformatic workflows as Kartalaei Product-as-a-Service OTHER POSTERS WITHIN DATA THEME

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Johanna McEntyre

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Application Biotechnology

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Daniela Börnigen

Data poster

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579 578 363 809 584

828

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830 703 503

738 715 593 690 516

794

Christian Ruckert

869

Seonho Kim and Hong-Woo Chun

677

Tammi Vesth, Sebastian Theobald, Inge Kjærbølling, Jane L. Nybo, Ronald de Vries, Igor Grigoriev, Scott Baker and Mikael Rørdam Andersen Fabio Rinaldi and Lenz Furrer

863 710

454 754 441

Theo Knijnenburg, Ilya Shmulevich, Sheila Reynolds, Phyliss Lee, Michael Miller, Kelly Iverson, Abigail Hahn, Zack Rodebaugh, Kalle Leinonen, David Gibbs, Varsha Dhankani, Jonathan Bingham, Nicole Deflaux, Matt Bookman and David Pot Georg Summer, Thomas Kelder, Marijana Radonjic, Marc van Bilsen, Suzan Wopereis and Stephane Heymans Florian Graef, Guilherme Formaggio De Mello and Johanna McEntyre Kumar Parijat Tripathi, Daniela Evangelista, Antonio Zuccaro and Mario Guarracino

848 482

Jennifer Leclaire, Stefan Tenzer and Andreas Hildebrandt Parham Solaimani Kartalaei, Maarten-Jan Kallen and Alexander Bertram

415

Daniela Börnigen, Francisco Ojeda, Philipp Wild, Karl Lackner, Tanja Zeller and Stefan Blankenberg Lingjian Yang, Amanda Williamson, Joely Irlam, Helen Denley, Peter Hoskin, Ananya Choudhury and Catharine West Fotis Psomopoulos, Athanassios Kintsakis and Pericles Mitkas Andrian Yang, Michael Troup and Joshua Ho

432

580 655

Fotis Psomopoulos Mascha Jansen Doron Levi

Dong-Gi Lee Dong-Gi Lee Luca Beltrame Tilo Buschmann

Johannes Köster

Jorge Muñoz

Bernd van der Veen

Duong Vu Ian Harrow

Theo Knijnenburg

Lingjian Yang

Fotis Psomopoulos Andrian Yang

The Bio Term Hub: an integrated resource of biomedical terminology The ISB Cancer Genomics Cloud

A genetic evaluation of multiple cardiovascular risk factors in the European population A network-based approach to derive hypoxia gene signature for bladder cancer patients

A pan-genome approach and application to species Data poster with photosynthetic capabilities A quick and flexible transcriptomic feature quantification Data poster framework on the cloud

Fundamental Fundamental

555 514

Krzysztof Mnich and Witold Rudnicki Christian Wünsch, Henrik Banck, Jan Stenner and Martin Dugas

Krzysztof Mnich Christian Wünsch

798

Francesca Mulas

550

Francesca Mulas, Chun Zeng, Yinghui Sui, Gene Yeo and Maike Sander Agnes Hotz-Wagenblatt, Lin Wang, Renuka Pasupuleti, Christopher Previti and Karl-Heinz Glatting Seyed Ziaeddin Alborzi, Marie-Dominique Devignes and David Ritchie Lilit Nersisyan, Anna Hakobyan and Arsen Arakelyan

585

Sarah Elshal, Jesse Davis and Yves Moreau

Sarah Elshal

395

Sascha Losko, Richard Albang, Hildegard Menke, Verena Schütz, Emiel Ver Loren van Themaat ,Martin Wolff, Kaj Albermann, Klaus Heumann, Hans Roubos and Marco de Groot Bas Stringer, Albert Meroño-Peñuela, Frank Van Harmelen, Sanne Abeln and Jaap Heringa Sjoerd M. H. Huisman, Baldur van Lew, Ahmed Mahfouz, Nicola Pezzotti, Thomas Hollt, Lieke Michielsen, Anna Vilanova, Marcel Reinders and Boudewijn P.F. Lelieveldt Jaak Simm, Adam Arany, Hugo Ceulemans and Yves Moreau Aurelie Martin, Laurent Naudin and Sébastien Tourlet

Sascha Losko

561 384

737 859

671 813

840 390 539 545

767 465 664

817

330 844

317 656 612

397

706

553 634 352 587 623

808 536 464 510

400 795

277 751

340 321

372 833 860

752 595

782 469 827 639

Agnes HotzWagenblatt Seyed Ziaeddin Alborzi Lilit Nersisyan

Bas Stringer

A robust approach for discovery of synergistic variables AML-Varan – a web-based platform to display and analyze genomic variants from targeted Nextgeneration sequencing data in clinical practice Analysis of Single Cells on a Pseudotime Scale along postnatal pancreatic beta cell development Are you missing important variant information with whole exome sequencing due to coverage problems? Associating Gene Ontology Terms with Protein Domains

Data poster Data poster

Fundamental Health

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Biotechnology

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Association of telomere length with epigenetic regulation of gene expression Beegle 2.0: Yes! We can start from literature mining and end up with disease-gene discovery Beyond Silos: Knowledge Management as the Key to Operational Excellence in Genetic Engineering

Data poster

Health

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Biotechnology

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Biotechnology

BLASTing the Semantic Web

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Sjoerd M. H. Huisman BrainScope: interactive visual analysis of brain-wide genome-wide expression data

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Jaak Simm

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Health

Aurelie Martin

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Agro-Food

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EcosystemsHealth

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Broker Macau: joint model building with privacy preservation Characterization and bioinformatic analysis of a prostate cancer multi-scale network: Gene coexpression, mutome, interactome Matteo Manica, Roland Mathis and María Rodríguez Matteo Manica CoDON, a learning framework for linking genomics and Martínez transcriptomics data to protein expression Nirupama Benis, Maria Suarez Diez, Dirkjan Schokker, Vitor Nirupama Benis Commonalities and differences in gut mucosal A.P. Martins Dos Santos and Mari Smits responses upon exposure to different classes of stimuli Michael J. Pesavento, Pranathi V. N. Vemuri, Caroline Michael J. Pesavento Comparison of vascular networks from high resolution Miller, Jenny Folkesson and Megan Klimen 3D whole organ microscopic analysis Charles Labuzzetta, Margaret Antonio, Patricia Watson, Charles Labuzzetta Complementary Feature Selection from Alternative Robert Wilson, Lauren Laboissonniere, Jeffrey Trimarchi, Splicing Events and Gene Expression for Phenotype Baris Genc, P. Hande Ozdinler, Dennis Watson and Paul Prediction Anderson Kyoko Watanabe, Erdogan Taskesen and Danielle Kyoko Watanabe Comprehensive functional annotation of GWAS risk loci Posthuma and candidate gene selection Byungwook Lee Byungwook Lee Construction of database server for Korean patented biological sequences Rudi L. van Bavel, E.J. Blom, Lian Wiggers-Perebolte, Rob E.J. Blom CropPedia – Integrated database and software Spee, Maarten L. Hekkelman, Remco M.P. van Poecke, Jan interface for gene lead discovery and accelerated van Oeveren and Anker P. Sørensen breeding Mouna Rouass, Aurélie Martin, Laurent Naudin and Mouna Rouass Data mining for signaling networks in bladder cancer: Sébastien Tourlet Automatic pipeline of RNASeq data treatment and graph theory based analysis Daniela Borgmann, Serge Weis, Peter Strasser and Daniela Borgmann Dementia Classification and Recognition Based on Stephan Winkler Neuropathological, Haematological, and Genetic Data Aideen Roddy, Anna Jurek, Alexey Stupnikov, Paul O'Reilly, Aideen Roddy Development of computational models to study Peter Bankhead, Philip Dunne, David Gonzalez de Castro, mechanisms of tumour evolution for therapeutic Kevin Prise, Manuel Salto-Tellez and Darragh McArt vulnerabilities Jean-Fred Fontaine and Miguel A. Andrade-Navarro Jean-Fred Fontaine Disease enrichment analysis for gene sets based on cooccurrences in the literature Amin Allahyar and Jeroen de Ridder Amin Allahyar Disease specific network with application in network based outcome prediction Woong Na, Kijong Yi, Young Soo Song and Moon Hyang Young Soo Song Dissecting the Role of IgG Subclasses and Park Complements in Membranous Lupus Nephritis and Primary Membranous Nephropathy Muhammad Ammad-Ud-Din, Suleiman A.Khan, Disha Muhammad Ammad- Drug response prediction by inferring pathwayMalani, Astrid Murumägi, Olli Kallioniemi, Tero Aittokallio Ud-Din response associations with Kernelized Bayesian Matrix and Samuel Kaski Factorization Lara Schneider, Daniel Stöckel, Tim Kehl, Andreas Lara Schneider DrugTargetInspector: An assistance tool for patient Gerasch, Michael Kaufmann, Oliver Kohlbacher, Andreas treatment stratification Keller and Hans-Peter Lenhof Asta Laiho, Arfa Mehmood and Laura L. Elo Asta Laiho EBSEA: An Exon Based Strategy to Find Differentially Expressed Genes from RNA-seq Studies Witold Rudnicki, Paweł Tabaszewski, Szymon Migacz, Witold Rudnicki Efficient Exhaustive Search for Synergistic Informative Krzysztof Mnich and Andrzej Sułecki Variables Abdulrahman Azab Abdulrahman Azab Enabling Docker Packaged Tools for HPC Veronika Weyer-Elberich, Yasmin Abassi, Detlef Schuppan, Veronika WeyerExploring cell type deconvolution by a weighted Ernesto Bockamp and Harald Binder Elberich regression approach for the resulting groups Alfonso Muñoz-Pomer Fuentes, Wojciech Bażant, Elisabet Alfonso MuñozExpression Atlas: Functional Genomics Resource at Barrera, Melissa Burke, Jana Eliasova, Nuno Fonseca, Pomer Fuentes EMBL-EBI Laura Huerta, Anja Fullgrabe, Maria Keays, Satu Koskinen, Irene Papatheodorou, Amy Tang, Robert Petryszak and Alvis Brazma Peter Walgemoed and Bert Eussen Peter Walgemoed Genomic data curation by design Fiona Nielsen and Nadezda Kovalevskaya Fiona Nielsen Genomic data projects around the world: how to find data for your research Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa and Tsachy Kedar Tatwawadi GTRAC: Fast retrieval from compressed collections of Weissman genomic variants Valentin Voillet, Phillipe Besse, Laurence Liaubet, Magali Valentin Voillet Handling Missing Rows in Multi-Omics Data Integration: San Cristobal and Ignacio Gonzalez Multiple Imputation in Multiple Factor Analysis Framework Chantriolnt-Andreas Kapourani and Guido Sanguinetti Chantriolnt-Andreas Higher order methylation features for clustering and Kapourani prediction in epigenomic studies Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan Yevshin, Vsevolod Makeev HOCOMOCO: data integration for building collection of Haitham Ashoor, Wail Ba-Alawi, Artem S. Kasianov, Yulia reliable transcription factor binding sites models Medvedeva,Vladimir Bajic, Fedor Kolpakov and Vsevolod Makeev Nick Juty, Sarala Wimalaratne, Nicolas Le Novère and Nick Juty Identifiers.org: services towards interoperability Henning Hermjakob Sebastien Tourlet, Frederic Scaerou, Aurelie Martin, Arunthi Sebastien Tourlet iFiT: an integrative Bioinformatics platform for Thiagalingam, Isabelle Paty, Laurent Naudin and Philip biomarker and target discovery. A case study in Harris neuroendocrine tumors. Sean Robinson, Jaakko Nevalainen, Guillaume Pinna, Anna Sean Robinson Incorporating interaction networks into the Campalans, J. Pablo Radicella and Laurent Guyon determination of gene hits with Markov random fields Morihiro Hayashida and Hitoshi Koyano Morihiro Hayashida Integer linear programming approach to median and center strings for a probability distribution on a set of strings Vitor C. Piro and Bernhard Y. Renard Vitor C. Piro Integrating metagenome analysis tools to improve taxonomic profiling and organism identification Jun Cheng, Kerstin Maier, Fabien Bonneau, Žiga Avsec, Jun Cheng Integrative analysis of mRNA half-life cis-regulatory Patrick Cramer and Julien Gagneur elements Yongsoo Kim, Wilbert Zwart, Lodewyk Wessels and Daniel Yongsoo Kim Integrative soft multi-way clustering of pan-cancer cell Vis line data to identify context-specific regulation in cancer genome Sebastien Tourlet, Aurelie Martin and Laurent Naudin Sebastien Tourlet iTox: Prediction of toxicity using system's biology approaches on the biological target profile. Ben C Stöver, Sarah Wiechers and Kai F Müller Ben C Stöver JPhyloIO: A Java library for event-based reading and writing of different alignment and tree formats through one common interface Mira Valkonen, Matti Nykter, Leena Latonen and Pekka Mira Valkonen Learning based detection of early neoplastic changes in Ruusuvuori histological images Ryohei Suzuki, Daisuke Komura and Shumpei Ishikawa Ryohei Suzuki Learning High-level Features of Pathology Images Using Multi-Resolution Convolutional Auto-Encoders Neetika Nath, Christian Klose, Mathias Gerl, Michal A. Neetika Nath Lipoinformatics – machine learning approach to study Surma, Kai Simons and Lars Kaderali lipid profiles Borong Shao and Tim Conrad Borong Shao Lung Cancer Prognosis Classification - the Effect of Data Types, Feature Transformation, Classifiers and Threshold

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724 668

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816 659 451 366 471

399 318 876 478 350 547 732

819 449

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379 574

873

Daniela Börnigen, Francisco Ojeda, Christian Müller, Tina Daniela Börnigen Haase, Julia Krause, Caroline Röthemeier, Tim Hartmann, Manuel Kratzke, Judith Wahrheit, Diana Lindner, Dirk Westermann, Renate Schnabel, Stefan Blankenberg and Tanja Zeller Fanny Georgi, Vardan Andriasyan, Artur Yakimovich, Robert Fanny Georgi Witte and Urs Greber Dalia Cohn-Alperovich, Alona Rabner,Ilona Kifer,Yael Mandel-Gutfreund and Zohar Yakhini Perla Aurora Troncoso Rey and Wiktor Jurkowski Susanne Schaller, Johannes Weinberger, Sandra Mayr, Thomas Stuettler, Peter Lackner andStephan Winkler Kees van Bochove, Reinhard Schneider, Sacha Herzinger, Wei Gu, Venkata Satagopam, Serge Eifes,Riza Nugraha, Gustavo Lopes,Piotr Zakrzewski,Peter Kok,Ward Weistra,Janneke Schoots, Annick Peleraux, Rogerio Martins, Heike Schürmann, Sherry Cao, Hugo Berube, Andrew Hill, Jay Bergeron,Florian Guittonand Axel Oehmichen Dilip Durai and Marcel Schulz

Metabolomics analyses in cardiovascular diseases for biomarker discovery

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MorphoSphere: A deep learning framework to score cancer cell proliferation and oncolytic virus efficacy in spheroid models Dalia Cohn-Alperovich Mutual enrichment in aggregated ranked lists with applications to gene expression regulation Perla Aurora Network assisted combined analysis of transcriptomics Troncoso Rey and metabolomics data Susanne Schaller New Developments in ImmunExplorer: From NGS Data Over Machine Learning To Health State Prediction Kees van Bochove Open Source Development Success through collaboration: SmartR in tranSMART

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Dilip Durai

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Optimal normalization of sequence data for de novo transcriptome assembly Robbin Bouwmeester Penalizing miRNA-mRNA correlations based on their association likelihood improves enrichment of relevant terms in B-cell differentiation Aliaksei Vasilevich, Shantanu Singh, Aurélie Carlier and Jan Aliaksei Vasilevich Phenotypic space as benchmark of cells fate de Boer Electra Tapanari, Dan Bolser, Alessandro Vullo, Robert Electra Tapanari Plant RNA-Seq data in the Track Hub Registry Petryszak, Christoph Grabmueller, Paul Kersey, Nuno Fonseca, Laura Huerta Martinez and Maria Keays Rabie Saidi, Alexandre Renaux, Tunca Dogan and Maria Rabie Saidi PredComp: A tool for comparing and benchmarking Martin protein annotation predictions against UniProtKB Martin Strazar and Tomaz Curk Martin Strazar Predicting alternative splicing from contextual information on splicing factors Wojciech Lesinski, Agnieszka Kitlas Golinska, Aneta Wojciech Lesinski Predicting Arrhythmia with Random Forest Polewko-Klim, Andrzej Przybylski and Witold R. Rudnicki Sofia Papadimitriou, Andrea Gazzo, Guillaume Smits, Ann Sofia Papadimitriou Predicting digenic variant effects with DIDA Nowé and Tom Lenaerts Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Ken Hiroki Konishi Prediction of antigen-specific immunoglobulins from Tominaga, Ryohei Suzuki and Shumpei Ishikawa amino acid sequences using semi-supervised deep learning. Konstantin Okonechnikov, Ana Conesa and Fernando Konstantin Qualimap 2: advanced multi-sample quality control for Garcia-Alcalde Okonechnikov high-throughput sequencing data Jan Koster, Richard Volckmann, Piet Molenaar, Danny Jan Koster R2: Accessible online genomics analysis and Zwijnenburg and Rogier Versteeg visualization platform for biomedical researchers Katerina Taškova and Miguel Andrade-Navarro Katerina Taškova Rank aggregation-based prioritization of drug-response genes in toxicogenomic data Nicola Lazzarini and Jaume Bacardit Nicola Lazzarini RGIFE: a ranked guided iterative feature elimination heuristic for biomarkers identification Eugenia Galeota and Mattia Pelizzola Eugenia Galeota SEMANTIC AWARE RETRIEVAL AND INTEGRATION OF PUBLIC (EPI)GENOMICS METADATA Gurnoor Singh, Arnold Kuzniar, Anand Gavai, Richard Gf Gurnoor Singh Semantic-mining of QTL tables in scientific articles for Visser and Richard Finkers trait lead discovery Richard Lupat, Jason Li, Kaushalya Amarasinghe, Chalini Richard Lupat Seqliner: software framework for managing and Wijetunge, Jordan Sands and Tony Papenfuss developing sustainable bioinformatics analysis pipelines in a production environment Adem Bilican, Yves Widmer, Simon Sprecher and Rémy Adem Bilican Systems Biology of forgetting in Drosophila Bruggmann Chul Kim, Boseok Seong, Sang-Jun Yea, Yunji Jang, Chul Kim The correlation analysis between the user search Seokjong Yu and Hyojin Kang trends and prescription usage in the traditional Korean medicine Mana Tarjoman and Seyyed Morteza Fattahi Mana Tarjoman The Fuzzy Approach for Content based Human Brain Magnetic Resonance Images Retrieval with Relevance Feedback Małgorzata Wnętrzak, Paweł Błażej and Paweł Mackiewicz Małgorzata Wnętrzak The impact of crossover operator on the genetic code optimization performed by Evolutionary Algorithms Lea A.I. Vaas, Janneke Schoots, Stefan Payralbe, Steen Lea A.I. Vaas The ND4BB Information Centre – general concept and Manniche, Kees van Bochove, Cindy Levy-Petelinkar, Claus technical challenges Stie Kallesøe, Phil Gribbon and Manfred Kohler Alberto Cacciola, Sara Ciucci, Claudio Durán, Alessandro Alberto Cacciola Topo-pathological re-wiring in brain structural Calamuneri, Giuseppe Anastasi, Demetrio Milardi, Angelo connectomes of Parkinson’s Disease patients Quartarone, Placido Bramanti and Carlo Vittorio Cannistraci Sam Nicholls, Amanda Clare, Wayne Aubrey and Sam Nicholls Towards an algorithm for extracting exciting enzymes Christopher Creevey from metagenomic data sets Todd Taylor, Naveen Kumar and Maxime Hebrard Todd Taylor Turning 'big data' into 'small data' through crowdsourced curation: integrating all types of scientific knowledge Seyed Ziaeddin Alborzi, Marie-Dominique Devignes and Marie-Dominique Using Content-Based Filtering to Infer Direct David Ritchie Devignes Associations between the CATH, Pfam, and SCOP Domain Databases Markus List Markus List Using Docker compose for the simple deployment of an integrated high-throughput screening platform Amjad Alkodsi, Katja Kaipio, Johanna Hynninen, Sakari Amjad Alkodsi Whole-genome characterization of pre- and postHietanen, Rainer Lehtonen, Olli Carpén, Seija Grénman and treatment high-grade serous ovarian cancer Sampsa Hautaniemi Yana Safonova, Alexander Shlemov, Andrey Bzikadze and Yana Safonova Y-Tools, a toolkit for analysis of adaptive immune Sergey Bankevich repertoires using immunosequencing data Robbin Bouwmeester, Frans M van der Kloet, Martijs J Jonker, Age K Smilde and Johan A Westerhuis

THEME/TRACK: ELIXIR EasyChair Author list number

Presenting author

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714

Joan Segura

3DBIONOTES: Unifying molecular biology information

ELIXIR poster

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Chao Zhang

A Systematic Solution to Map Processed Data in tranSMART to Raw Data in Multiple Repositories

ELIXIR poster

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Jon Ison Carlos Horro

bio.tools : tools & data services registry BioCIDER: a Contextualisation InDEx for biological Resource discovery BioXSD | BioJSON | BioYAML - Integrated formats for sequence data

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Aravind Venkatesan

Bridging literature and data using text-mined annotations in Europe PMC

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Pedro L Fernandes

Business Model Canvas for ELIXIR

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Andrew Smith

CORBEL - Harmonisation of access to Europe’s biomedical research infrastructures Data Management Planning in ELIXIR

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836

818 772 770 838

Joan Segura, Daniel Tabas Madrid, Ruben Sanchez-Garcia, Jesús Cuenca, Carlos Oscar Sánchez Sorzano, Ardan Patwardhan and Jose Maria Carazo Chao Zhang, Sanne Abeln, Jochem Bijlard, Christine Staiger, Youri Hoogstrate, Alexander Senf, Saskia Hiltemann, David van Enckevort, Remond Fijneman, JanWillem Boiten, Gerrit Meijer, Dylan Spalding, Jaap Heringa, Susanna Repo, Niklas Blomberg, Andrew Stubbs, Jordi Rambla de Argila, Luiz Olavo Bonino Da Silva Santos, Morris Swert, Wibo Pipping, Ward Weistra, Kees van Bochove, Mariska Bierkens and Jeroen Belien Jon Ison and Registry-Core Bio.Tools Core Team Carlos Horro, Manuel Corpas, Rafael Jiménez and John Hancock Matúš Kalaš, Sveinung Gundersen, László Kaján, Hervé Ménager, Jon Ison, Christophe Blanchet, Steve Pettifer, Rodrigo Lopez, Kristoffer Rapacki andInge Jonassen Aravind Venkatesan, Julien Gobeill, Jee-Hyub Kim, Francesco Talo, Michele Ide-Smith, Patrick Ruch and Johanna Mcentyre Jose Borbinha, Pedro L Fernandes, Inês Chaves, Bruno Costa, Daniel Faria, João Cardoso, Célia Miguel, Ahmad Nadali,Daniel Sobral, Arlindo Oliveira,Mário J. Silva and Cymon Cox Niklas Blomberg, Friederike Schmidt-Tremmel, Andrew Smith and Manuela Schuengel Rob Hooft, Niclas Jareborg, Frederik Coppens, Heinz Stockinger, Robert Pergl and Brane Leskosek Alba Gutiérrez-Sacristán, Janet Piñero, Núria QueraltRosinach, Emilio Centeno and Laura I. Furlong Maxim Scheremetjew, Simon Potter, Dario Vianello, Hubert Denise, Alex Mitchell and Rob Finn

Matúš Kalaš

Rob Hooft Janet Piñero

disgenet2r: An R package to explore the molecular underpinnings of human diseases Maxim Scheremetjew EBI’s Metagenomics Pipeline: Moving towards cloud computing

785

Mikael Linden, Michal Procházka, Premysl Velek, Susanna Repo, Tommi Nyrönen and Ilkka Lappalainen José María Fernández González, Juergen Haas, Salvador Capella, Torsten Schwede and Alfonso Valencia Stephanie Suhr, Susanna Repo and Niklas Blomberg

Premysl Velek

ELIXIR Authentication and authorization infrastructure

ELIXIR poster

ELIXIR

Salvador Capella

ELIXIR-EXCELERATE WP2 Activities

ELIXIR poster

ELIXIR

Susanna Repo

ELIXIR poster

ELIXIR

Salvador Capella-Gutiérrez, Josep Ll. Gelpi and Alfonso Valencia John Hancock Magnus Palmblad, Arzu Tugce Guler, Anna-Lena Lamprecht, Kristian Davidsen, Jon Ison and Veit Schwämmle

Salvador CapellaGutiérrez John Hancock Magnus Palmblad

ELIXIR-EXCELERATE: accelerating the implementation of ELIXIR ELIXIR-Spain: Activities overview and future perspectives in the context of ELIXIR-EXCELERATE ELIXIR-UK Functional software annotation and automatic workflow generation for mass spectrometry data processing

ELIXIR poster

ELIXIR

ELIXIR poster ELIXIR poster

ELIXIR ELIXIR

805

Michael Dondrup, Wei Zhang, Frank Nilsen, Zhaoran Zhou and Inge Jonassen

Michael Dondrup

ELIXIR poster

ELIXIR

726

David Sehnal, Karel Berka, Lukáš Pravda, Radka Svobodová-Vařeková, Michal Otyepka and Jaroslav Koča

Karel Berka

ELIXIR poster

ELIXIR

666

Klaas Vandepoele

Klaas Vandepoele

ELIXIR poster

ELIXIR

429

Konstantinos D. Tsirigos, Arne Elofsson and Pantelis G. Bagos Andrew Nightingale, Jie Luo, Leyla Jael García Castro, Maria Martin and Uniprot Consortium Robert Sket, Nejc Porenta, Jan Jona Javorsek and Blaz Stres

Konstantinos D. Tsirigos Andrew Nightingale

ELIXIR poster

ELIXIR

ELIXIR poster

ELIXIR

ELIXIR poster

ELIXIR

Margarita C. Theodoropoulou, Konstantinos D. Tsirigos, Stavros Hamodrakas and Pantelis G. Bagos Diana Domanska and Abdulrahman Azab

Margarita C. Theodoropoulou Diana Domanska

ELIXIR poster

ELIXIR

740

ELIXIR poster

ELIXIR

866

Jiri Vondrasek

Jiri Vondrasek

ELIXIR poster

ELIXIR

829

Niall Beard, Aleksandra Nenadic, Susanna-Assunta Sansone,Terri Attwood,Carole Goble, Rafael Jiminez,Milo Thurston, Norman Morrison, Celia. Van Gelder and Fredrick Coppens Herve Menager and Edam-Core Edam Core Team Ilkka Lappalainen, Jordi Rambla, Serena Scollen, Mikael Linden, Macha Nikolski, J. Dylan Spalding and Susanna Repo Sveinung Gundersen, Matúš Kalaš, Boris Simovski, Brynjar Rongved, Henrik Skifjeld, Sivert Kronen Hatteberg, Abdulrahman Azab, Osman Abul, Arnoldo Frigessi,Geir Kjetil Sandveand Eivind Hovig Frederic B. Bastian, Julien Roux, Mathieu Seppey, Komal Sanjeev, Valentine Rech de Laval, Philippe Moret, Panu Artimo, Séverine Duvaud, Vassilios Ioannidis, Heinz Stockinger and Marc Robinson-Rechavi Ian Sillitoe, Natalie Dawson, Paul Ashford, Sayoni Das, Su Datt Lam, Jon Lees, Millie Pang and Christine Orengo Eric Bonnet, Yimin Shen, Xavier Benigni, Nizar Touleimat, Jorg Tost, Jean-François Deleuze and François Artiguenave

Niall Beard

LiceBase – a species focused resource for sea lice – including an RNAi LIMS and tools for data analysis and genome annotation MOLE 3.0 – remastered tool for detection and analysis of functionally important “void spaces” within biomacromolecules PLAZA 3.0: an access point for comparative and regulatory genomics in plants PRED-TMBB2: Improved topology prediction and detection of beta-barrel outer membrane proteins Protein Data Services and Feature Viewer Enabling Knowledge Driven Research Reanalysis of bacerial 16S rRNA genes in wild ruminants: ELIXIR-Slovenia implementation of MOTHUR and R Recent updates in the Database of Outer Membrane Proteins (OMPdb) in 2016 Software Provisioning Inside a Secure Environment as Docker Containers using STROLL File-system Structural Bioinformatics and Cheminformatics - the major focus of the Czech ELIXIR Node Structured Data for Life Science using Schema.org

ELIXIR poster

ELIXIR

Herve Menager Serena Scollen

The EDAM Ontology The ELIXIR Beacon Project

ELIXIR poster ELIXIR poster

ELIXIR ELIXIR

Sveinung Gundersen The GTrack ecosystem - expressive file formats for analysis of genomic track data

ELIXIR poster

ELIXIR

Frederic B. Bastian

TopAnat : a new way to understand genomics results using gene expression enrichment in anatomy

ELIXIR poster

ELIXIR

Natalie Dawson

Using CATH-Gene3D to explore the impacts of disease- ELIXIR poster induced genetic variations WBS: a computational pipeline for the treatment of ELIXIR poster whole-genome high-throughput bisulfite sequencing data

ELIXIR

867 806 861 34 683

713 877

534

831 786

871

762

784 477

Blaz Stres

Eric Bonnet

ELIXIR

ELIXIR/TRAINING 339

841 822 617

Teresa K. Attwood, Louisa Bellis, Cath Brooksbank, Pedro L Louisa Bellis Fernandes, Valerie Florance, Rita Hendricusdottir, Lee Larcombe, Patricia M. Palagi, Celia W.G. van Gelder, Allegra Via, Sarah L. Morgan, Gabriella Rustici and Rochelle E. Tractenberg Brane Leskosek, Eija Korpelainen and Jure Dimec Brane Leskosek Niall Beard, Terri Attwood and Aleksandra Nenadic Bjoern Gruening and The De.Nbi Special Interest Group Training And Education

Niall Beard Bjoern Gruening

Assessing the impact(s) of international bioinformatics & computational biology training within ELIXIR & BD2K

ELIXIR/Training poster

ELIXIR Training

Node collaboration through the ELIXIR e-learning platform – follow up TeSS - The Life Science Training Portal The de.NBI Training Network

ELIXIR/Training poster

ELIXIR Training

ELIXIR/Training poster ELIXIR/Training poster

ELIXIR Training ELIXIR Training

Theme/track assignment

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THEME/TRACK: GENES EasyChair Author list number

Presenting author

Title

APPLICATION POSTERS WITHIN GENES THEME 803

Haruka Ozaki and Itoshi Nikaido

Haruka Ozaki

678

Rakesh Meena and Sanket Thakur

Rakesh Meena

ATAC2NET: A pipeline for reconstructing gene regulatory network based on ATAC-Seq data Morphological, Biochemical and Differential Gene Expression in Leaves of YVMV Resistant and Susceptible Lines of Okra Re-annotation of the ant Camponotus floridanus genome, comprehensive analysis of its immune transcriptome and general reconstruction of ant interactomes TCGAbiolinks: An R/Bioconductor package for integrative analysis with TCGA data

Genes/Application poster Application Fundamental

802

Shishir Gupta, Roy Gross and Thomas Dandekar

Shishir Gupta

864

Antonio Colaprico, Tiago Silva, Catharina Olsen, Luciano Antonio Colaprico Garofano, Claudia Cava, Davide Garolini, Thais S. Sabedot, Tathiane M. Malta, Stefano M. Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi and Houtan Noushmehr OTHER POSTERS WITHIN GENES THEME

Genes/Application poster Application

733

Aubin Samacoits, Florian Mueller and Thomas Walter

Aubin Samacoits

Biotechnology

Tine Goovaerts, Sandra Steyaert, Jeroen Galle, Tim De Meyer and Wim Van Criekinge

Tine Goovaerts

Genes poster

Fundamental

753

Lisa Barros de Andrade E Sousa and Annalisa Marsico

Genes poster

Fundamental

709

Virag Sharma, Bjoern Langer, Leo Foerster, Pradeep Kiruvale and Michael Hiller Patrick van den Berg, Stefan Semrau and Nikolai Slavov

Lisa Barros de Andrade E Sousa Virag Sharma

3D FISH image simulation framework to develop analysis method for mRNA localization A mixture model for the omics based identification of monoallelically expressed loci and their deregulation in cancer A statistical model for epigenetic regulation of miRNAs

Genes poster

814

A Systematic Approach to Identify Gene Losses using Genome Alignments An integrated transcriptomics and proteomics study of embryonic stem cell differentiation Analysis of PacBio full-length mRNA sequencing data uncovers widespread coupling between alternative transcription start sites, exons and polyadenylation sites Application of the random forest method in identification of candidate genes in quantitative trait loci regions for adaptive immune responses of chicken Bayesian Identification of Translation from Ribosome Profiling Biomarker identification in early clinical development – effective combination of hypothesis driven and data driven approaches in a clinical phase II trial assessing copanlisib activity in non-Hodgkin Lymphoma Can transcription determine mRNA translation in mammals? Digging evidence with sequence analysis. Capturing protein-RNA interaction footprints from iCLIPseq data CIMP in adrenocortical carcinomas is associated with high expression of DNMT1 and increased Wnt and Notch signaling pathways activities. CoExpNetViz: the Construction and Vizualisation of Coexpression Networks Computational modeling of RNA secondary structure using a novel approach ConTra v3: a tool to identify transcription factor binding sites across species, update 2016 Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

Genes poster

Fundamental

Genes poster

Fundamental

Genes poster

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Genes poster

Agro-Food

Genes poster

Health

Genes poster

Health

Genes poster

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Genes poster

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Genes poster

Health

Genes poster

Biotechnology

Genes poster

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Genes poster

Biotechnology

Genes poster

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404 549

Patrick van den Berg

Peter-Bram 't Hoen, Eleonora de Klerk, Martijn Vermaat, Yavuz Ariyurek, Johan den Dunnen, Stephen Turner and Seyed Yahya Anvar Polewko-Klim Aneta, Lesiński Wojciech, Kitlas Golińska Agnieszka, Siwek Maria and Rudnicki Witold

Peter-Bram 't Hoen

474

Brandon Malone, Ilian Atanassov and Christoph Dieterich

Brandon Malone

349

Karl Koechert, Jie Cheng, Li Liu, Jose Garcia-Vargas, Barry Karl Koechert Childs and Carol Pena

362

Irina A. Eliseeva, Ilya E. Vorontsov and Ivan V. Kulakovskiy

Ivan V. Kulakovskiy

843

Sabrina Krakau, Hugues Richard and Annalisa Marsico

Sabrina Krakau

792

Gwenneg Kerdivel and Valentina Boeva

Gwenneg Kerdivel

573

Oren Tzfadia, Tim Diels, Klaas Vandepoele, Yves Van de Peer and Asaph Aharoni Josef Panek

Oren Tzfadia

Lukasz Kreft, Pieter De Bleser, Paco Hulpiau, Arne Soete, Alexander Botzki and Yvan Saeys Maarten van Iterson, Erik van Zwet, Bastiaan Heijmans and Eline Slagboom

Lukasz Kreft

467

423 456 338

Polewko-Klim Aneta

Josef Panek

Maarten van Iterson

Genes/Application poster Application Biotechnology

Genes/Application poster Application Biotechnology

457

Petr Nazarov, Matthieu Gobin, Andrei Zinovyev, Eric van Dyck and Laurent Vallar Konstantina Dimitrakopoulou, Elisabeth Wik, Lars Akslen and Inge Jonassen Kristoffer Niss, Lasse Folkersen, Claus Berthelsen, Kirstine Belling and Søren Brunak

Petr Nazarov

Nicolas Nahuel Moreyra, Julian Mensch, Juan Hurtado and Esteban Hasson Ole Eigenbrod, Jane Reznick, Damir Omerbasic and Gary R. Lewin Foivos Gypas, Andreas Gruber, Alexander Kanitz and Mihaela Zavolan

Nicolas Nahuel Moreyra Ole Eigenbrod

434

Yao-Ming Chang, Arthur Chun-Chieh Shih, Ling Li, Ya-Ting Chang and Chien-Chang Chen

Yao-Ming Chang

485

Aslihan Gerhold-Ay, Johanna Mazur and Harald Binder

Aslihan Gerhold-Ay

560

Inken Wohlers, Andriy Mashychev, Marcel Schilling, Christina M. Lill and Lars Bertram

Inken Wohlers

592

Michaela Bayerlova, Annalen Bleckmann and Tim Beissbarth Michaela Bayerlova

507

Jorge Langa, Iratxe Montes, Martin Huret, Erwan Duhamel, Darrell Conklin and Andone Estonba

Jorge Langa

852

Lorena de La Fuente Lorente

681

Lorena de La Fuente Lorente, Ana Conesa, Manuel Tardaguila, Hector Del Risco, Cristina Marti, Victoria Moreno and Susana Rodriguez Rianne Beukhof, Madelon Engels, Sanne Abeln, Bas Stringer, Maurits Dijkstra, Ted Meeds and Jaap Heringa Anna Feldmann and Nico Pfeifer

757

Arlin Keo

Arlin Keo

736

Ahmed Mahfouz, Boudewijn P.F. Lelieveldt, Aldo Grefhorst, Ahmed Mahfouz Lisa T.C.M. van Weert, Isabel M. Mol, Hetty C.M. Sips, Jose K. van den Heuvel, Nicole A. Datson, Jenny A. Visser, Marcel J.T. Reinders and Onno. C. Meijer Ge Tan and Boris Lenhard Ge Tan

637 608

409 581 708

734

598

Konstantina Dimitrakopoulou Kristoffer Niss

Foivos Gypas

Madelon Engels Anna Feldmann

Fundamental

Genes poster

Agro-Food Ecosystems

Genes poster

Fundamental

First among Equals -- Discriminating Driver and Passenger Mutations From Predicting to Analyzing HIV-1 Resistance Towards Broadly Neutralizing Antibodies Functional analysis of polyQ genes by examining spatial co-expression across the human brain. Genome-wide co-expression of steroid receptors in the mouse brain: identifying signaling pathways and functionally coordinated regions

Genes poster

Health

Genes poster

Health

Genes poster

Fundamental

Genes poster

Health

Health

Genes poster

Health

Genes poster

Fundamental

PeakXus: A Comprehensive Peak Calling Software for ChIP-Nexus and ChIP-exo POTAGE - a web application integrating map location with gene expression and functional annotation Potential of lncRNA to regulate gene expression through promoter binding in Drosophila Melanogaster Predicting the impact of genetic variation in livestock

Genes poster

Fundamental

Genes poster

Agro-Food

Genes poster

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Genes poster

Agro-Food

Jairo Rocha Audrey Michel

Ranking Putative Cancer Driver Gene Subsets RiboSeq.Org for ribosome profiling data analysis and visualisation.

Genes poster Genes poster

Health Fundamental

Kerem Wainer Katsir

Single Cell Expression Data as a Direct Measure for Identifying Human Genes that Escape X-Inactivation sORFs.org: a repository of small ORFs identified by ribosome profiling

Genes poster

Fundamental

Genes poster

Fundamental

Subgrouping of pediatric medulloblastoma using an integrated analysis of MicroRNA-mRNA expression profile Temporally-aware discovery of regulatory cascades

Genes poster

Health

Genes poster

Health

Chien-Yu Chen

Volodimir Olexiouk

250

Volodimir Olexiouk, Steven Verbruggen, Jeroen Crappé, Kenneth Verheggen,Lennart Martens and Gerben Menschaert Sivan Gershanov, Shalom Michowiz, Helen Toledano, Orit Barinfeld, Albert Pinhasov, Nitza Goldenberg-Cohen and Mali Salmon-Divon Joana P. Gonçalves, Jeroen de Ridder and Lodewyk F.A. Wessels David Holloway and Alexander Spirov

658

Nick Dimonaco, Robert Hoehndorf and Amanda Clare

Nick Dimonaco

401

Deepak Karthik, Gil Stlelzer, Sivan Gershanov, Danny Baranes and Mali Salmon-Divon Djordje Djordjevic, Kenro Kusumi and Joshua Ho

Deepak Karthik

Joske Ubels, Erik van Beers, Pieter Sonneveld, Martin van Vliet and Jeroen de Ridder

Joske Ubels

783

Genes poster

Genes poster

Mei-Ju May Chen, Yu-Rui Su, Ping Chang, Tai-Rong Hong, Bor-Wei Cherng,Yi-An Tung and Chien-Yu Chen Christian Groß, Marcel Reinders, Dick De Ridder, Martijn Derks, Mirte Bosse, Hendrik-Jan Megens and Martien Groenen Jairo Rocha, Jaume Sastre Tomas and Emidio Capriotti Audrey Michel, James P. A. Mullan, Stephen Kiniry, Vimalkumar Velayudhan, Patrick B. F. O'Connor and Pavel Baranov Kerem Wainer Katsir and Michal Linial

665

Health

Meta-analysis of Polycystic Kidney Disease expression profiles defines strong involvement of injury repair processes Mixed Integer Linear Programming based machine learning approach identifies regulators of telomerase in yeast Partitioning of PLETHORA target expression domains guides cell differentiation

Alexandra Poos

825

Genes poster

Biotechnology

Alexandra Poos, Andre Maicher, Anna Dieckmann, Marcus Oswald, Roland Eils, Martin Kupiec, Brian Luke and Rainer König Luca Santuari, Gabino F. Sanchez-Perez, Bas Rutjens, Lidija Berke, Viola Willemsen, Berend Snel, Kenzo Nakamura, Dick de Ridder, Ben Scheres and Renze Heidstra Tuomo Hartonen, Biswajyoti Sahu, Kashyap Dave, Teemu Kivioja and Jussi Taipale Radoslaw Suchecki and Ute Baumann

387

Health

Genes poster

Stefan Tomiuk

479

Genes poster

Fundamental

Stefan Tomiuk, Jutta Kollet, Michail Knauel, Lena Willnow, Stefan Wild, Silvia Rüberg, Claudius Fridrich, Peter Mallmann, Frauke Alves, Philipp Ströbel, Dominik Eckardt, Andreas Bosio and Olaf Hardt Tareq Malas

378

Fundamental

Genes poster

468

646 481

Genes poster

Biotechnology

Ping-Han Hsieh

388

Fundamental

Genes poster

Ping-Han Hsieh, Wen-Ting Wang, He Wang, Wei-Jhen Huang and Chien-Yu Chen

496

Fundamental

Genes poster

Health

480

546

Ecosystems

Genes poster

Fundamental

Yi-Wei Lee, Ting-Yu Chang, Hsei-Wei Wang, Oscar Kuang- Yi-Wei Lee Sheng Lee, I-Fang Chung and Shung-Haur Yang

563

Genes poster

Genes poster

493

716

Health

Genes poster

Konrad Zych, Chris Maliepaard, Roeland E. Voorrips, Gerrit Konrad Zych Gort, Nick de Vetten, Johan C.P. Hopman, Jan M. de Haas, Michiel A. Noback, Ronald Wedema, Jan-Peter H. Nap and Ritsert C. Jansen Saskia Trescher, Jannes Münchmeyer, Christopher Schiefer Saskia Trescher and Ulf Leser Hyojin Kang, Chul Kim, Boseok Seong and Seokjong Yu Hyojin Kang

691

Health

Genes poster

In-silico Approaches for Estimating Transcription Factor Activity from Transcriptome Data Integrated approach to combine RNA-seq- and Microarray-derived gene co-expression networks in Alzheimer's disease Integrated database for long non-coding RNA discovery, profiling, and annotation from RNAsequencing data sets across cancers Investigating the effect of similar subsequences present in assembled transcripts on RNA-seq quantification for non-model organisms Isolation of primary human tumor cells improves culture of target cells and reduces bias in molecular analysis

513

788

Fundamental

Genes poster

Fundamental

Charles-Henri Lecellier, Wyeth W. Wasserman and Anthony Charles-Henri Mathelier Lecellier

487

Genes poster

Genome-wide prediction of regulatory territories and Genes poster target genes under complex long distance cis-regulation Human enhancers associated with immune response Genes poster harbor specific sequence composition, activity, and genome organization Improving potato breeding with computational and Genes poster functional genomics

450

406

Decomposition of transcriptional signal from tumours using independent component analysis Deconvolution of transcriptome data from heterogeneous tissue samples Decreased immune gene expression variation along the colon in non-inflamed mucosa of ulcerative colitis patients Differential expression analysis of cold tolerance adaptation by RNA-seq de novo approach. Discovering molecular signatures of extreme physiology using African mole-rats Discovery, annotation and abundance estimation of transcript isoforms from high-throughput sequencing data Dynamically Genetic Program by Co-regulated TF Groups during the Pressure Overload-induced Cardiac Hypertrophy in Mice Enhancing prediction performance by using mapping approaches for data integration of RNA-Seq and methylation data Evaluating the prediction of SNPs with effects on miRNA-mediated mRNA expression using transcriptome sequencing data Evaluation of gene signatures applied to expression data of cancer patient cohorts Exahustive analysis of the European sardine (Sardina pilchardus) transcriptome: de novo assembly, annotation and expression of eleven tissues FAIR, Functional Analysis at Isoform Resolution by using long reads technologies

Tareq Malas

Luca Santuari

Tuomo Hartonen Radoslaw Suchecki

Christian Groß

Sivan Gershanov

Joana P. Gonçalves David Holloway

Djordje Djordjevic

Fundamental

Agro-Food

TRANSCRIPTIONAL BURSTING IN DROSOPHILA Genes poster DEVELOPMENT: STOCHASTIC DYNAMICS OF PAIRRULE EXPRESSION Using Gene Ontology annotations to understand Genes poster lethality phenotypes Utilizing the Benford law for unravelling tissue specificity Genes poster

Fundamental

XGSA: A statistical method for cross-species gene set analysis zPFS: a method to identify gene expression signatures to predict treatment specific survival in cancer

Genes poster

Application Fundamental

Genes poster

Health

Theme/track assignment

Topics

Fundamental Fundamental

THEME/TRACK: GENOMES EasyChair Author list number

Presenting author

Title

APPLICATION POSTERS WITHIN GENOMES THEME 832

Mahdi Heydari, Giles Miclotte and Jan Fostier

Mahdi Heydari

761

Roy Straver, Erik Sistermans, Marjan Weiss and Marcel Reinders

Roy Straver

475

Ulrike Löber, Pin Cui, David E. Alquezar-Planas, Yasuko Ishida, Alexandre Courtiol, Dorina Lenz, Kristofer M. Helgen, Alfred L. Roca, Stefanie Hartmann and Alex D. Greenwood Anjana Ghelani, Pravin Dudhagara and Rajesh Patel

Ulrike Löber

537

Anjana Ghelani,

Brownie : correcting second generation sequencing errors using de Bruijn graphs Detection of Copy Number Aberrations in Exome Sequencing Data Based on a Within-Sample Comparison Scheme ERV evolution - A bioinformatics pipeline to investigate retroviral integration in museum koala samples

Genomes/Application poster Application

Genome sequence annotation of virgibacillus spp BAB 3240 strain isolated saline desert soil, Gujarat, India

Genomes/Application poster Application Biotechnology

Genomes/Application poster Application Health

Genomes/Application poster Application

393

Kshitij Tayal, Naveen Sivadasan and Rajgopal Srinivasan

Kshitij Tayal

369

Corinne P. Oechslin, Philipp Agyeman, Rémy Bruggmann, Lucy Poveda, Stephen L. Leib and Christian M. Beuret

Corinne P. Oechslin

413

Yuuma Hosokawa, Asuka Kitajima, Satoshi Fujii, Midori Iida, Toshimasa Yamazaki, Hiroki Sasaki, Kazuhiko Aoyagi and Takahiro Yamanoi Lieven Sterck,Thomas Van Parys, Stephane Rombauts and Yves Van De Peer Jane L. Nybo, Tammi Vesth, Jens C. Frisvad, Sebastian Theobald, Inge Kjærbølling, Igor V. Grigoriev, Scott E. Baker and Mikael R. Andersen Asuka Kitajima, Yuuma Hosokawa, Satoshi Fujii, Midori Iida, Toshimasa Yamazaki, Hiroki Sasaki, Kazuhiko Aoyagi and Takahiro Yamanoi Harmen van de Werken, Job van Riet, Niels Krol, Peggy Atmodimedjo, John Martens, Leendert Looijenga, Guido Jenster, Hendrikus Dubbink and Winand Dinjens

Yuuma Hosokawa

669

Anna Hakobyan, Lilit Nersisyan and Arsen Arakelyan

Anna Hakobyan

638

Husen M. Umer, Marco Cavalli, Michal J. Dabrowski, Klev Diamanti, Marcin Kruczyk, Gang Pan,Jan KomorowskiandClaes Wadelius Pieter Libin, Nassim Versbraegen, Lize Cuypers, Kristof Theys and Ann Nowé Kartikay Chadha, Jo Knight and Andrew D Paterson

Husen M. Umer

535 564

412

705

777 721 618 371 542 527 842 569

484 768 526

504 373 548

771 621

629 551

566 344

411

599

515

324

438 25 729 865 386 361

605 443

461 122 346 823 519 662 631 649 596

Jane L. Nybo

Genomes/Application poster Application

ORCAE: A wiki-style platform enabling efficient community curation of gene and genome annotations Ortholog identification in genera of high genetic diversity and evolution

Genomes/Application poster Application

Asuka Kitajima

Prognostic feature extraction in colorectal cancer by combining the gene expression data and the clinical data. Harmen van de SNPitty: Lightweight Shiny-Based B-Allele Frequency Werken Web Viewer For Detecting Loss of Heterozygosity and Allelic Imbalances in Targeted Multi-Gene Panels. OTHER POSTERS WITHIN GENOMES THEME

Pieter Libin Kartikay Chadha

Matyas Pajkos and Zsuzsanna Dosztanyi Matyas Pajkos Pola Smirin-Yosef, Sarit Kahana, Idit Maya, Doron Levi, Lina Pola Smirin-Yosef Basel-Vanagaite and Mali Salmon-Divon Diego Chacon and Jason W. H. Wong Diego Chacon Farzana Rahman, Mehedi Hassan, Negusse Kitaba, Abdulsamie Hanano and Denis Murphy Heinz Himmelbauer, Alexandrina Bodrug, J. Mitchell McGrath, Britta Schulz and Juliane C. Dohm Jan Grau, Maik Reschke, Annett Erkes, Jana Streubel, Richard D Morgan,Geoffrey G Wilson, Ralf Koebnik and Jens Boch Jikai Lei and Yanni Sun Denis Baurain, Mick Van Vlierberghe, Arnaud Di Franco and Hervé Philippe Anna Ershova, Ivan Rusinov, Andrei Alexeevski, Sergei Spirin and Anna Karyagina

GPhase: Greedy Approach for Accurate Haplotype Inferencing Host nucleic acid depletion method increases sensitivity of pathogen detection by metagenomics analysis in surrogate cerebrospinal fluid samples Identification of distinct subtypes in colorectal cancer with the survival and the primary sites

Farzana Rahman Heinz Himmelbauer Annett Erkes

Genomes/Application poster Application

Genomes/Application poster Application

Genomes/Application poster Application Biotechnology

Genomes/Application poster Application

Genomes/Application poster Application Health

A computational approach for estimation of epigenetic Genomes poster states at telomeres A distinctive mutational pattern at CTCF motifs in cancer Genomes poster

Fundamental

A maximum likelihood method for classifying virus sequences A Novel Method to identify Significant DNA motifs in the human genome associated with Alzheimer’s disease. A novel motif centric protein alignment method A study of normal CNV variations in Israeli population

Genomes poster

Health

Genomes poster

Health

Genomes poster Genomes poster

Fundamental Health

Analysis of chromosomal instability in 123 breast Genomes poster cancer samples through integrative proteogenomics Analysis of the structure, function and evolution of Genomes poster caleosins: a family of multifunctional eukaryotic proteins Analyzing the genomes of wild and cultivated beets Genomes poster

AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences Yanni Sun Assemble CRISPRs from metagenomic data Mick Van Vlierberghe Automated tools for the generation and interpretation of single gene trees at a broad taxonomic scale. Anna Ershova AVOIDANCE OF GATC SITE AS ADAPTATION TO HORIZONTAL GENE TRANSFER IN MIXED BACTERIAL POPULATIONS Carolin Walter, Daniel Schuetzmann, Frank Rosenbauer Carolin Walter Basic4CSim: A benchmarking approach for 4C-seq and Martin Dugas pipelines on simulated datasets Annika Buerger, Boet van Riel, Frank Rosenbauer and Annika Buerger BasicSTARRseq: a Bioconductor R-package for Martin Dugas analyzing STARR-seq data Mathu Malar C, Jennifer Yuzon,Takao KasugaandSucheta Mathu Malar C Benchmarking the genome assembly of Phytophthora Tripathy ramorum Pr102 using third generation sequencing technology Mattias de Hollander, Victor Carrion, Marcio Leite, Jos Mattias de Hollander Classification and binning of plant root and nodule Raaijmakers and Eiko Kuramae metagenomes Jaime Castro-Mondragon, Alejandra Medina-Rivera, Samuel Jaime CastroClustering and enrichment of Transcription Factor Collombet, Denis Thieffry, Morgane Thomas-Chollier and Mondragon Binding Motifs within RSAT Jacques van Helden Corinna Ernst, Eric Hahnen and Schmutzler Rita Corinna Ernst CNV Detection on Multi Gene Panels Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane L. Inge Kjærbølling Co-evolution of secondary metabolite gene clusters and Nybo, Sebastian Theobald, Thomas O. Larsen, Uffe H. their host Mortensen and Mikael R. Andersen Jonas Ibn-Salem, Enrique M. Muro and Miguel A. Andrade- Jonas Ibn-Salem Co-regulation of paralog genes in the three-dimensional Navarro chromatin architecture Florian Schmidt, Nina Gasparoni, Gilles Gasparoni, Kathrin Florian Schmidt Combining transcription factor binding affinities with an Gianmoena, Cristina Cadenas, Julia K. Polansky, Peter open chromatin prior for accurate gene expression Ebert, Karl Nordström, Matthias Barann, Anupam Sinha, prediction Sebastian Fröhler, Jieyi Xiong, Azim Dehghani Amirabad, Fatemeh Behjati Ardakani, Barbara Hutter, Gideon Zipprich, Bärbel Felder, Jürgen Eils, Benedikt Brors, Wei Chen, Jan G. Hengstler, Alf Hamann, Thomas Lengauer, Philip Rosenstiel,Joern WalterandMarcel Schulz Yuvia Alhelí Pérez-Rico, Valentina Boeva, Allison Mallory, Yuvia Alhelí PérezComparative analyses of super-enhancers reveal Angelo Bitetti, Sara Majello, Emmanuel Barillot and Alena Rico conserved elements in vertebrate genomes Shkumatava Seppo Virtanen, Ilkka Kalliala, Pekka Nieminen and Anne Seppo Virtanen Comparative Analysis of Vaginal Microbiota Sampling Salonen Methods Determined Using MiSeq 16S rRNA gene sequencing Rudy Pelicaen, Luc De Vuyst, Stefan Weckx and Koen Rudy Pelicaen Comparative genomic analysis reveals adaptations of Illeghems Acetobacter ghanensis and Acetobacter senegalensis to the cocoa bean fermentation process Mirjam Rehr and Stefanie Göllner Mirjam Rehr Comparing alignment and assembly strategies for targeted high-throughput sequencing with barcoded amplicons Dimitrios Zisis, Paweł Krajewski, Iris Hovel and Maike Stam Dimitrios Zisis Comparison of computational methods for 4C-seq NGS data analysis Sarah Sandmann, Aniek de Graaf, Bert van der Reijden, Sarah Sandmann Confident Variant Calling in NGS Data – A Mission Joop Jansen and Martin Dugas Impossible? Remi-Andre Olsen Remi-Andre Olsen De novo genome sequencing as a service Jasmijn Baaijens, Amal Makrini,Eric RivalsandAlexander Jasmijn Baaijens De novo viralquasispecies assembly Schoenhuth Marita A. Isokallio and James B. Stewart Marita A. Isokallio Detecting purifying selection of mitochondrial DNA using a simple next-generation sequencing protocol Kevin Vanneste, Bert Bogaerts, Qiang Fu, Raf Winand, Qiang Fu Development and implementation of a transversal NGS Sigrid De Keersmaecker and Nancy Roosens & bioinformatics platform at the Belgian Institute of Public Health: Deployment of user-friendly pipelines for routine use Martina Fischer, Benjamin Strauch and Bernhard Y. Renard Martina Fischer Differential abundance testing on the strain level in metagenomics data Fatemeh Behjati Ardakani, Nina Gasparoni, Laura Arrigoni, Fatemeh Behjati Distinct epigenetic architectures in bidirectional Sarah Kinkley, Matthias Barann, Sebastian Froehler, Peter Ardakani promoters revealed by single cell analysis Ebert, Andreas S. Richter, Gilles Gasparoni, Karl Nordstroem, Florian Schmidt, Stefan Wallner, Jan Hengstler, Kathrin Gianmoena, Cristina Cadenas, Barbara Hutter, Gideon Zipprich, Baerbel Felder, Juergen Eils, Benedikt Brors, Julia K. Polansky, Thomas Lengauer, Wei Chen, Ho-Ryun Chung, Thomas Manke, Philip Rosenstiel, Joern Walter and Marcel H. Schulz Anthony Mathelier, Beibei Xin, Tsu-Pei Chiu, Lin Yang, Anthony Mathelier DNA shape features improve transcription factor Remo Rohs and Wyeth Wasserman binding site predictions in vivo Federico Comoglio, Tsu-Pei Chiu and Remo Rohs Federico Comoglio DNAshapeR: a Bioconductor package for highthroughput DNA shape prediction and feature encoding Serghei Mangul, Harry Taegyun Yang, Sagiv Shifman, Serghei Mangul Dumpster diving in RNA-sequencing to find the source Eleazar Eskin and Noah Zaitlen of every last read Christopher Schröder, Felix Mölder, Christoph Stahl and Felix Mölder EAGLE: an easy-to-use web-based exome analysis Sven Rahmann environment Clemens Messerschmidt, Dieter Beule and Manuel Clemens Efficient and Reliable HTS Data/Sample Consistency Holtgrewe Messerschmidt Check based on HLA Types Bartek Wilczynski and Jerzy Tiuryn Bartek Wilczynski Efficient method for detection of evolutionarily conserved regulatory elements Sokratis Kariotis, Jeroen de Ridder and Sjoerd Huisman Sokratis Kariotis Enhancer-gene networks for the identification of cancer driver genes affected by enhancer mutations Laura Adams, Christina Boucher, Martin Muggli, Simon Martin Muggli Enzyme Selection for Optical Mapping is Hard Puglisi and Shiho Sugimoto Teresa Szczepińska and Dariusz Plewczynski Teresa Szczepińska Epigenetic marks of the chromatin 3D structure

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Health Biotechnology Agro-Food

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Alba Crespi, David Longbottom and T. Ian Simpson

Alba Crespi

520

Manuel Holtgrewe and Dieter Beule

Manuel Holtgrewe

748

Ehsan Motazedi

435

Ehsan Motazedi, Chris Maliepaard, Richard Finkers and Dick de Ridder Claudia Calabrese, Nuno A Fonseca, Alvis Brazma and Oliver Stegle Shay Ben-Elazar, Benny Chor and Zohar Yakhini

704 512

Franziska Metge and Christoph Dieterich Claudia Calabrese

Franziska Metge Sascha Meiers

834

Leon Kuchenbecker, Knut Reinert and Peter Robinson

Leon Kuchenbecker

538

Rajesh Patel

Rajesh Patel

654

Alex Salazar, Marcel van den Broek, Melanie Wijsman, Arthur Gorter de Vries, Pilar de La Torre, Anja Brickwedde, Nick Brouwers, Jean-Marc Daran and Thomas Abeel

Alex Salazar

583

Jole Costanza, Chiara Ronchini, Margherita Bodini, Luciano Jole Costanza Giacò, Anna Candoni, Renato Fanin, Alessandro Cignetti, Corrado Tarella, Antonella Padella, Giovanni Martinelli, Pier Giuseppe Pelicci and Laura Riva Ivo Pedruzzi, Catherine Rivoire, Andrea H. Auchincloss, Ivo Pedruzzi Elisabeth Coudert, Guillaume Keller, Patrick Masson, Edouard de Castro, Delphine Baratin, Béatrice A. Cuche, Lydie Bougueleret, Sylvain Poux, Nicole Redaschi, Ioannis Xenarios and Alan Bridge Seong-Jin Park, Gunhwan Ko and Byungwook Lee Seong-Jin Park

633

405

466 749

Establishing method selection criteria for meta-genomic sequence analysis using high-throughput sequence simulators Evaluation of structural variant methods for mediumsized deletions in clinical application Exploiting Next Generation Sequencing to solve the Haplotyping puzzle in Polyploids Expression QTL mapping in a PanCancer cohort

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Extending partial haplotypes to full genome haplotypes using Chromosome Conformation Capture data FUCHS - Full circle characterization using RNAseq Functional impact of genomic rearrangements on chromatin organization and transcriptional regulation Functional T cell receptor beta-chain gene sequence discrimination using SVMs Genome sequence annotation of Salinicoccus sp BAB_3246 strain isolated from salt Pan, Gujarat, India Genome sequencing and assembly of the biotechnology-relevant yeast strain, CENPK113-7D, using only Oxford Nanopore long-reads shows evidence for a heterogeneous population of cells Genomics of chemoresistant acute myeloid leukemia

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HAMAP - leveraging Swiss-Prot curation for the annotation of uncharacterized proteins

Genomes poster

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HASV: Hadoop-Based NGS Analyzer for Predicting Genomic Structure Variations Hierarchical modeling of three-dimensional chromatin organization based on ChIA-PET data

Genomes poster

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Genomes poster

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High-resolution refinement of Large Scale Genomic Rearrangements using repetitions: A case study Icarus: visualizer for de novo assembly quality assessment Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers Identification of subtype specific microbiome from tumour tissue RNAseq data in colorectal cancer. Identification of the higher order repeats from T.castaneum to Human and Neanderthal genome using computational Global Repeat Map method Identifying the functional role of transcription factors via phylogeny-aware discriminative sequence motif scoring Improve homology search sensitivity of PacBio data by correcting frameshifts Improving the prediction of Human processed pseudogenes Joint analysis of GWAS with epigenetic data revealed candidate markers in FTD/MND, and convergence in pathways. Karyollele specific expression in Agaricus bisporus

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Learning sequence patterns of AGO-sRNA affinity from high-throughput sequencing libraries to improve functional sRNA categorization in plants Mapping-Based Horizontal Gene Transfer Detection from Sequencing Data - Enhancing Metagenomic Approaches for Pathogen Identification MetaTreeMap: A New Visualization of Metagenomic Phylogenic Trees Mutational signatures in normal adult stem cells of different human tissues

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Ecosystems

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Nadezda Volkova

Mutational signatures of DNA repair deficiencies and cytotoxin exposures in C. elegans

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Natalia Szóstak

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

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Sergio Díaz Del Pino

New-Venues for the visual analysis of multiple genome Genomes poster comparison NEXUS: supporting precision medicine with state-of-the Genomes poster art technologies for molecular diagnostics

Biotechnology

No Promoter Left Behind: New method that reveals novel promoter architectures from genome-wide transcription start sites Nucleosome Dynamics portal

Genomes poster

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Genomes poster

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Nucleotide pangenome of Brucella highlights evolutionary events OMSim: simulating optical mapping data OncoSimulR: genetic simulation of cancer progression with arbitrary epistasis and mutator genes Open Source Development Success through collaboration: Contributions to cBioPortal

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Claudia Calabrese Shay Ben-Elazar

Przemyslaw Szalaj

376

Przemyslaw Szalaj, Paul Michalski, Zhonghui Tang, Przemyslaw Wroblewski, Yijun Ruan and Dariusz Plewczyński Jose Antonio Arjona-Medina, Guillermo Thode and Oswaldo Trelles Alla Mikheenko, Vladislav Saveliev and Alexey Gurevich

18

Jens Friis-Nielsen,Jose Mg Izarzugaza and Søren Brunak

Jose Mg Izarzugaza

862

Barbora Hanáková, Eva Budinská and Jan Oppelt

Barbora Hanáková

769

Ines Vlahović, Matko Glunčić, Marija Rosandić and Vladimir Ines Vlahović Paar

781

Björn Langer and Michael Hiller

Björn Langer

408

Nan Du and Yanni Sun

Nan Du

796

Sweta Talyan, Miguel Andrade-Navarro and Enrique Muro

Sweta Talyan

315

Erdogan Taskesen, Anniket Mishra,Danielle Posthumaand Yolande Pijnenburg

Erdogan Taskesen

594

Thies Gehrmann, Jordi Pelkmans, Han Wösten, Johan Baars, Anton Sonnenberg, Marcel Reinders and Thomas Abeel Lionel Morgado and Frank Johannes

Thies Gehrmann

600

Kathrin Trappe, Enrico Seiler, Jan R. Forster, Tobias Marschall and Bernhard Renard

Kathrin Trappe

398

Maxime Hebrard and Todd D. Taylor

Maxime Hebrard

688

Francis Blokzijl, Joep de Ligt, Myrthe Jager, Valentina Sasselli, Sophie Roerink, Hans Clevers, Ruben van Boxtel and Edwin Cuppen Nadezda Volkova, Bettina Meier, Victor Gonzalez Huici, Simone Bertonlini, Peter Campbell, Anton Gartner and Moritz Gerstung Natalia Szóstak, Agnieszka Rybarczyk, Maciej Antczak,Tomasz Zok, Mariusz Popenda,Ryszard Adamiak, Jacek Blazewicz andMarta Szachniuk Sergio Díaz Del Pino,Jose Antonio Arjona-Medina, Óscar Torreño Tirado, Samuel Benavides and Oswaldo Trelles Franziska Singer, Nora Toussaint, Michael Prummer, Falco Kilchmann, Miquel Busquets Lopez, Christian Stirnimann and Daniel Stekhoven Sneha Mitra and Leelavati Narlikar

Francis Blokzijl

613

517

765

375

589 377

342

850

Jose Antonio ArjonaMedina Alla Mikheenko

Lionel Morgado

Nora Toussaint

Leelavati Narlikar

627

Ricard Illa, Diana Buitrago, Laia Codó, Romina Royo, Adam Ricard Illa Hospital, Isabelle Heath, Josep Lluís Gelpí and Modesto Orozco Boris Nagaev, Alexandra Simonova and Andrei Alexeevski Andrei Alexeevski

799 427

Giles Miclotte Ramon Diaz-Uriarte

Giles Miclotte Ramon Diaz-Uriarte

360

Sjoerd van Hagen

695

Sjoerd van Hagen, Pieter Lukasse, Sander de Ridder, Fedde Schaeffer, Priti Kumari, James Lindsay, Jianjiong Gao, Benjamin Gross, Zachary Heins, Adam Abeshouse, Hongxin Zhang, Yichao Sun, Robert Sheridan, Onur Sumer, Stuart Watt, Chris Sander, Nikolaus Schultz, Ethan Cerami and Jochem Bijlard Matthias Scholz, Doyle V. Ward, Edoardo Pasolli, Thomas Tolio, Moreno Zolfo, Francesco Asnicar, Duy Tin Truong, Adrian Tett, Ardythe L. Morrow and Nicola Segata Cornelia Meckbach, Rebecca Tacke, Stephan Waack, Edgar Wingender and Mehmet Gültas Sebastian Theobald, Tammi Vesth, Jane L. Nybo, Inge Kjærbølling, Jens C. Frisvad, Kristian F. Nielsen, Thomas O. Larsen, Igor V. Grigoriev, Asaf Salamov, Uffe H. Mortensen, Scott E. Baker and Mikael R. Andersen Anuj Kumar, Aditi Chauhan, Sai Kumar Kompelli, Vijay Gahlaut, Krishna Pal Singh, Mnv Prasad Gajula, Prashanth Suravajhala, Deepak Kumar, Mukesh Kumar Nautiyal, Harindra Singh Balyan and Pushpendra Kumar Gupta Dmitry Penzar, Mikhail Krivozubov and Sergey Spirin

699

Loukas Mouzos and Thomas Abeel

Loukas Mouzos

343

Daniel Buxton, Nadia Chuzhanova and Jonathan Crofts

Daniel Buxton

562

Andrea Gazzo, Daniele Raimondi, Dorien Daneels, Guillaume Smits, Sonia Van Dooren and Tom Lenaerts Debjit Ray

Andrea Gazzo

541

524 696

750

4

Matthias Scholz

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Pangenome-based computational metagenomic Genomes poster profiling enables strain-level culture-free epidemiology and population genomics studies. PC-TraFF: identification of potentially collaborating Genomes poster transcription factors using pointwise mutual information Phylogenomic analysis of secondary metabolism genes Genomes poster sheds light on their evolution in Aspergilli

Health

Anuj Kumar

Potential of miRNA–SSRs in Arabidopsis thaliana Genome: A Novel Class of Microsatellites

Genomes poster

Biotechnology

Sergey Spirin

PQ, a new character-based program for phylogenetic reconstruction Practical approaches for constructing bacterial population reference graphs Predicting genomic regions linked to schizophrenia using the 3D architecture of the human genome Predicting oligogenic effects using digenic disease data

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Cornelia Meckbach Sebastian Theobald

Debjit Ray

Predictive Pathogen Biology: Genome-Based Prediction Genomes poster of Pathogenic Potential and Countermeasures Targets

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Biotechnology

502

872 486 320

676 544 839 774 725

425 500 358 731

590 522 815 611 694 348 701 380

572 440

Malgorzata A Komor, Annemieke C Hiemstra, Thang V Malgorzata A Komor Pham, Sander R Piersma, Anne S Bolijn, Pien M Delis-Van Diemen, Marianne Tijssen, Robert P Sebra, Bo Han, Maradith Ashby, Beatriz Carvalho, Gerrit A Meijer, Connie R Jimenez and Remond Ja Fijneman Marc Hulsman, Marcel J.T. Reinders and Henne Holstege Marc Hulsman

Proteogenomic pipeline for identification of novel biomarkers for colorectal cancer

Removing study-effects present in multi-center exome studies through a probabilistic burden statistic REPARATION: Ribosome Profiling Assisted (Re-) Annotation of Bacterial genomes Retrieval of genome-based information from sequence databases using hybrid homology-annotation searches: case of complete RNA virus genomes Paul Kirk, Maxime Huvet, Anat Melamed, Goedele Maertens Retroviruses integrate into a shared, non-palindromic and Charles Bangham DNA motif Tsukasa Fukunaga and Michiaki Hamada Tsukasa Fukunaga RIblast: An ultrafast RNA-RNA interaction prediction method based on seed-and-extension approach Alexey Stupnikov, Manuel Salto-Tellez, Frank EmmertAlexey Stupnikov Robustness and reproducibility in trancriptomics Streib and Darragh McArt analysis Emiel Ver Loren van Themaat Emiel Ver Loren van Scalable genome-wide characterization of lactic acid Themaat bacteria Francois Boyer, Hend Boutouil, Iman Dalloul, Jeanne Francois Boyer Search, identification and quantification of CSR Moreau, Jean-Claude Aldigier, Michel Cogné and Sophie junctions in high-throughput sequencing data using Péron CSReport Enrique Carrillo-De Santa Pau, David Juan, Felipe Were, Enrique Carrillo-De Searching for the chromatin determinants of Vera Pancaldi, Daniel Rico and Alfonso Valencia Santa Pau hematopoiesis Samuel Heron, Owen Dando, Giles Hardingham and Ian Samuel Heron Separation of Mixed Source RNA-Seq Reads by Simpson Comparative Genomic Processing Marc Sturm, Christopher Schroeder and Peter Bauer Marc Sturm SeqPurge: highly-sensitive adapter trimming for pairedend short read data Andrea Rodriguez-Martinez, Joram M Posma,Nikita Harvey, Andrea RodriguezSystems Genetics of Plasma 1H Nuclear Magnetic Jeremy K Nicholson, Marc-Emmanuel Dumas, JeanMartinez Resonance Metabotypes Associated with Baptiste Cazier, Pierre Zalloua and Dominique Gauguier Cardiometabolic Diseases in a Lebanese Cohort Per K. I. Wilhelmsson, Kristian K. Ullrich and Stefan A. Per K. I. Wilhelmsson TAPscan – An updated genome-wide transcription Rensing factor classification workflow Marko Verce, Luc De Vuyst and Stefan Weckx Marko Verce Taxonomic analysis of water kefir grains and liquor through shotgun metagenomics Daniela Beisser, Nadine Graupner, Lars Grossmann, Jens Daniela Beisser Taxonomic assignment of protist metatranscriptome Boenigk andSven Rahmann sequences Pawel Blazej, Wnetrzak Malgorzata, Dorota Mackiewicz and Pawel Blazej The influence of selection at the amino acid level on the Pawel Mackiewicz synonymous codons usage Maryam Abdollahyan, Fabrizio Smeraldi, Boris Noyvert and Maryam Abdollahyan Transcription Factor Binding Site-based Alignment of Greg Elgar Conserved Non-coding Sequences Francesco Pezzini, Daniel Scharf, Ekaterina Shelest and Francesco Pezzini Transcription factors – histones interplay in regulation of Axel Brakhage stress response genes Ritambhara Singh, Jack Lanchantin and Yanjun Qi Ritambhara Singh Transfer String Kernel for Cross-Context DNA-Protein Binding Prediction Tommi Rantapero, Minna Ampuja, Alejandra RodriguezTommi Rantapero Uncovering gene regulatory basis of differential BMP4 Martinez, Maaria Palmroth, Matti Nykter and Anne response in breast cancer cell lines Kallioniemi Jan Grau, Jens Keilwagen, Michael Wenk, Jessica Erickson, Jan Grau Using intron position conservation for homology-based Martin Schattat and Frank Hartung gene prediction Dmitry Ravcheev and Ines Thiele Dmitry Ravcheev Utilization of mucin glycoconjugates by human gut microbiota: analysis by comparative genomics Elvis Ndah, Veronique Jonckheere, Gerben Menschaert and Elvis Ndah Petra Van Damme Igor Sidorov, Andrey Leontovich, Dmitry Samborskiy and Igor Sidorov Alexander Gorbalenya

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THEME/TRACK: PROTEINS EasyChair Author list number

Presenting author

Title

APPLICATION POSTERS WITHIN PROTEINS THEME 674

Fatemeh Abbasi, Changiz Eslahchi and Reza Hassanzadeh Fatemeh Abbasi

673

Changiz Eslahchi, Ali Madi and Changiz Eslahchi

Changiz Eslahchi

311

Mohamed Ahmed

847

Asif Naqvi, Amina I. Dirar, Ghada M.E. Eltahir, Nidhi Tripathi, Samah Mahmoud Sami Mohamed Ahmed and Moustafa Ahmed Mohammed Thomas Kemmer and Andreas Hildebrandt

Thomas Kemmer

Saba Ferdous and Andrew Martin

Saba Ferdous

Proteins/Application posterApplication Health

326

Anoosha Paruchuri, Huang L-T, Sakthivel R, Karunagaran D and Michael Gromiha M

368

Rakesh Kumar Meena, Sayane Shome and Sanket Thakur

858

Pooya Zakeri, Jaak Simm, Adam Arany, Forough Amini, Mehdi Sadeghi and Yves Moreau Dhoha Triki, Telli Billot, Benoit Visseaux, Diane Descamps, Anne-Claude Camproux andLeslie Regad

Efficient nonlocal electrostatics computations for proteins using the Julia programming language Exploration of conformational B-cell epitopes: components to peptide-based vaccines Anoosha Paruchuri Exploring preferred amino acid mutations in cancer and discriminating driver and passenger mutations in Epidermal Growth Factor Receptor Rakesh Kumar In silico prediction of Okra (Abelmoschus esculentus L) Meena encoded micro-RNAs targets, Structure prediction and Molecular docking studies for Okra yellow Vein Mosaic virus. Pooya Zakeri Protein Fold Recognition Using Matrix Factorization Technique Dhoha Triki Study of natural resistance mechanisms of HIV protease-2 (PR2) against protease inhibitors (PI) OTHER POSTERS WITHIN PROTEINS THEME

Proteins/Application posterApplication

472

Patrick Löffler, Samuel Schmitz, Enrico Hupfeld and Rainer Merkl Dina Cramer, Luis Serrano and Martin H Schaefer

Patrick Löffler

Proteins poster

Biotechnology

Proteins poster

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Isaure Chauvot de Beauchene, Sjoerd De Vries and Martin Zacharias Mark Wass, Sarah Jeanfavre, Michael Coghlan, Martin Ridout, Anthony Baines and Michael Geeves Michal Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Paweł Mackiewicz and Malgorzata Kotulska Julia Marchetti, Guillermo Benítez, Alexander Monzon, Maria Silvina Fornasari, Silvio Tosatto and Gustavo Parisi

Isaure Chauvot de Beauchene Mark Wass

A Modular Framework to Extend Rosetta Protocols with Multistate Design A network of epigenetic modifiers and DNA repair genes controls tissue-specific copy number alteration preference A new fragment-based docking approach to model protein-bound ssRNA from sequence. Adaptation of mammalian myosin II sequences to body mass AmyloGram:a novel predictor of amyloidogenicity

Proteins poster

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Analyses of present proteins with reduce number of amino acids support the origin of first proteins from random sequences. Analysis of the HIV-2 protease deformation involved by inhibitor binding

Proteins poster

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Antimicrobial peptides mechanisms of membrane lysis and permeation by computer simulations Assessing functional conservation in alternative splice forms Benchmarking Multiple Protein Sequence Alignments and the Effect of Guide-Tree Topology Biomolecular structure and dynamics via combined solution scattering experiments & atomistic simulations Calculation of configurational entropy differences from conformational ensembles using Gaussian mixtures Characteristic of Early-folding Structural Elements the determines the protein fold CoDNaS 2.0: A comprehensive database of protein conformational diversity in the native state Comparative analysis of sequence covariation methods

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Comparison of large networks with sub-sampling strategies Consanguinity, genetic disease and molecular simulations Conserved DNA-protein contacts formed by TATA-box binding proteins Development of the new pharmacophore model: test screening of inhibitors for COX-2 and KAT II Environment Factor Depending on Each Sugar Type around O-glycosylation Sites in Mammalian Proteins

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389 854

483 824 452 801

531

Martin H Schaefer

Michal Burdukiewicz Julia Marchetti

693

Dhoha Triki, Mario Cano Contreras, Delphine Flatters, Dhoha Triki Benoit Visseaux, Diane Descamps, Anne-Claude Camproux andLeslie Regad Galo Ezequiel Balatti, M. Florencia Martini and Monica Galo Ezequiel Balatti Pickholz Maria Katsantoni, Tjaart de Beer and Torsten Schwede Maria Katsantoni

620

Fabian Sievers and Des Higgins

Fabian Sievers

382

Po-Chia Chen and Jochen Hub

Po-Chia Chen

460

Gergely Gyimesi, Péter Závodszky and András Szilágyi

András Szilágyi

557

Taushif Khan and Wim Vranken

Taushif Khan

763

Alexander Monzon, Cristian Oscar Rohr, Maria Silvina Fornasari and Gustavo Parisi Marie Chabbert, Julien Pele, Madeline Deniaud, Herve Abdi, Daniel Henrion and Patrice Rodien Waqar Ali, Anatol Wegner, Robert Gaunt, Charlotte Deane and Gesine Reinert R. Charbel Maroun, Pa Curmi and H El Shanti

Gustavo Parisi

651

586 322 365 424

Marie Chabbert Charlotte Deane R. Charbel Maroun

851

Olga Zanegina, Evgeniy Aksianov, Andrei Alexeevski, Anna Olga Zanegina Karyagina and Sergei Spirin Václav Mareška and Vojtěch Spiwok Václav Mareška

601

Kenji Etchuya and Yuri Mukai

Kenji Etchuya

A GRAPH THEORETICAL APROACH FOR DRUG Proteins/Application posterApplication Fundamental TARGET PREDICTION Discovering overlapped protein complexes from Proteins/Application posterApplication Fundamental weighted PPI networks by removing inter-module hubs Discovery of novel inhibitors for Focal Adhesion Kinase Proteins/Application posterApplication Biotechnology Health (FAK): Molecular modeling study for combating cancer

Proteins/Application posterApplication

Proteins/Application posterApplication Biotechnology

Proteins/Application posterApplication Fundamental Proteins/Application posterApplication Health

Proteins poster

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Kliment Olechnovic and Ceslovas Venclovas

Kliment Olechnovic

597

Maciej Pajak, Clive R. Bramham and T. Ian Simpson

Maciej Pajak

354

Anuj Kumar, Deepak Kumar, Sanjay Kumar, Upendra Kumar, M. K Nautiyal, Prashanth Suravajhala and M.N.V. Prasad Gajula

Anuj Kumar

509

Eugenia Polverini, Ilaria Menozzi and Rodolfo Berni

Eugenia Polverini

797

Tamás Langó, Gergely Róna, Éva Hunyadi-Gulyás, Lilla Turiák, Julia Varga, László Dobson, Nóra Kucsma, György Váradi, János Molnár, László Drahos, Beáta G. Vértessy, Katalin F. Medzihradszky, Gergely Szakács and Gábor E. Tusnády Zoran Sucur and Vojtech Spiwok

Tamás Langó

Tatsuki Kikegawa

28

Tatsuki Kikegawa, Hiromu Sugita, Ryohei Nambu, Noritaka Kato and Yuri Mukai Tomas Bastys, Vytautas Gapsys, Nadezhda Doncheva, Hauke Walter, Rolf Kaiser, Mario Albrecht, Bert Groot and Olga Kalinina Maarten Reijnders, Vitor Martins Dos Santos and Peter Schaap Eda Suku, Mattia Di Giacobbe, Behnoosh Bahadori, Stefano Capaldi, Mario R. Buffelli and Alejandro Giorgetti Milcah Kigoni, Mathew Ngugi and Mark Wamalwa

628

Dinithi Sumanaweera and Dr. A. Shehan Perera

533

Fabrizio Pucci, Raphaël Bourgeas, Jean Marc Kwasigroch and Marianne Rooman Ibrahim Tanyalcin, Julien Ferte, Taushif Khan, Gabriele Orlando, Daniele Raimondi, Carla Al Assaf, Marianne Rooman and Wim Vranken Nesrine Chakroun, Cheng Zhang and Paul Dalby

855 571 697

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821 463 700

Gift Nuka, Simon Potter, Siew-Yit Yong, Maxim Scheremetjew, Alex Mitchell, Matthew Fraser and Rob Finn Sirawit Ittisoponpisan, Eman Alhuzimi, Michael Sternberg and Alessia David Chloé Dequeker, Raffaele Raucci, Elodie Laine and Alessandra Carbone Nicholas Furnham, Natalie Dawson, Syed Rahman, Janet Thornton and Christine Orengo Daniele Raimondi, Andrea Gazzo, Marianne Rooman, Tom Lenaerts and Wim Vranken

Estimation of protein structure quality using contact areas derived from the Voronoi tessellation of atomic balls Exploring spatio-temporal landscape of post-synaptic proteome diversification and functionalisation Functional and Structural Insights into Novel DREB1A Transcription Factors in Common Wheat (Triticum aestivum L.): Is there a mechanism known to understand stress? HIGH STRUCTURAL AND FUNCTIONAL CONSERVATION BUT DIFFERENT LIGAND UPTAKE: THE ROLE OF THE HYDROPATHY PROFILE OF THE PROTEIN SURFACE High througput experimental method to improve topology prediction of transmembrane proteins

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Homology Modeling and Funnel Metadynamics in the study of oxytocin binding to its GPCR receptor Identification of the subcellular localization factors of transmembrane proteins Impact of point mutations on inhibitor affinity in HIV-1 protease

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Maarten Reijnders

Improving functional annotation of microalgal proteins

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Eda Suku

In silico deorphanization of the GPR3 receptor

Proteins poster

Biotechnology

In silico identification of potential transmission-blocking vaccine candidates for East Coast Fever. Dinithi Sumanaweera In silico prediction of protein function for Saccharomyces Cerevisiae; an ensemble approach Fabrizio Pucci In-silico prediction of protein thermal stability changes upon point mutations using HoTMuSiC Ibrahim Tanyalcin INDORIL: AN I-PV ADD-ON FOR VISUALIZATION OF POINT MUTATIONS ON 3D CARTESIAN COORDINATES Nesrine Chakroun Insights into the intrinsic Stability of a Therapeutic Fragment Antibody by Molecular Dynamics Simulations Gift Nuka InterProScan 5: Large scale protein function classification Sirawit Ittisoponpisan Landscape of pleiotropic proteins causing human disease: structural and system biology insights. Chloé Dequeker Large scale analysis of protein interactions

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Nicholas Furnham

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Zoran Sucur

Tomas Bastys

Milcah Kigoni

Large-Scale Analysis Exploring Evolution of Catalytic Machineries and Mechanisms in Enzyme Superfamilies Daniele Raimondi Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects Ana Julia Velez Rueda, Alexander Monzon, Luis Iglesias Gustavo Parisi Multiple dynamic feature alterations explain the reduced and Gustavo Parisi activity of enzymes in organic solvents Rashmi Hazarika and Vera van Noort Rashmi Hazarika Network evolution of MADS-domain protein interaction network François Ancien, Maxime Godfroid, Fabrizio Pucci and François Ancien Neural network-based predictions of deleterious human Marianne Rooman variants derived from protein structures and free energy estimations Hebat-Allah Samy Abd El Fattah and Essam Radwan Helmy Hebat-Allah Samy New time-efficient algorithm for prediciting the Abd El Fattah secondary structure of proteins Mohammad Tarek Mohammad Tarek Novel Potent Inhibitors for CIP2A with Mutational Classification Method Olga Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin Olga Voitenko Patterns of amino acids conservation in human and and Olga Kalinina animal immunodeficiency viruses Rosalba Lepore, Agnieszka Obarska-Kosinska, Alfredo Rosalba Lepore PepComposer: computational design of peptides Iacoangeli and Anna Tramontano binding to a given protein surface Emilie Neveu, David Ritchie, Petr Popov and Sergei Grudinin Emilie Neveu PEPSI-Dock : A Detailed Data-Driven Protein-Protein Interaction Potential Accelerated By Polar Fourier Correlation Luis Scott, Angelica Lima, Ronaldo Oliveira, Antônio Braz, TBC pH and aggregation effects in the conversion of human David Perahia and Maurcio Costa prion into scrapie form: a study using Molecular Dynamics and Normal Modes. Thanh Binh Nguyen and M.S. Madhusudhan Thanh Binh Nguyen Prediction of polyproline type II helices receptors Thach Nguyen and Michael Habeck Thach Nguyen Probabilistic model for segmentation of protein structures István Reményi, László Dobson and Gábor E. Tusnády István Reményi Profile modeling and multiple sequence alignment of transmembrane proteins Diego Alonso-Martinez and Peter Dimaggio Diego AlonsoProfiling the methylome targets of histone lysine Martinez methyltransferases Alexander Smolyakov, Ilya Altukhov, Sergey Gavrilov, Ivan Alexander Smolyakov Quantitative profiling of membrane-associated proteins Butenko, Olga Pobeguts, Ilya Kublanov and Dmitry Alexeev in Melioribacter roseus P3M-2 Francesca Nadalin and Alessandra Carbone Francesca Nadalin Residue propensity and local geometry of the interface contacts define the specificity of protein-protein interactions Gabriele Orlando, Daniele Raimondi, Tom Lenaerts and Gabriele Orlando RIGAPOLLO, A HMM-SVM BASED APPROACH TO Wim Vranken SEQUENCE ALIGNMENT Qingzhen Hou, Paul De Geest, Wim Vranken, Jaap Heringa Qingzhen Hou Seeing the Trees through the Forest: Sequence-based and K. Anton Feenstra Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest Wim Vranken, Daniele Raimondi, Gabriele Orlando and Rita Wim Vranken Sequence-based prediction of protein early folding Pancsa residues Miguel Correa Marrero, Richard G.H. Immink, Dick de Miguel Correa Simultaneous prediction of protein-protein contacts and Ridder and Aalt D.J. van Dijk Marrero interaction partners Mathilde Carpentier and Jacques Chomilier Mathilde Carpentier Structural Effect of Single Point Mutation on Protein Backbone Sudad Dayl and Ralf Schmid Ralf Schmid Structure prediction of the human P2X1 receptor using a homology modelling, ab initio modelling and crosslinking approach Michael Ringel and Thomas Brüser Michael Ringel SubtleP - A new software for subcellular translocation & localization prediction Bálint Mészáros, András Zeke, Attila Reményi, István Simon Bálint Mészáros Systematic analysis of somatic mutations driving and Zsuzsanna Dosztányi cancer: Uncovering functional protein regions in disease development Dániel Györffy, Péter Závodszky and András Szilágyi Dániel Györffy The blind leading the blind: how disordered peptides form an ordered complex Diego Honda, Sônia Freitas and João Martins Diego Honda The Bowman-Birk inhibitor from Vigna unguiculata seeds (BTCI) in complex with Trypsin: a molecular orbital study Marco Ávila-Rodriguez, Luis Miguel Garcia-Segura, Oscar George E. Barreto Tibolone protects astrocytic cells from glucose Hidalgo-Lanussa, Janneth Gonzalez and George E. Barreto deprivation through a mechanism involving estrogen receptor beta and the upregulation of neuroglobin expression Flavia Corsi, Alessandra Carbone and Elodie Laine Flavia Corsi Towards an accurate prediction of protein-DNA interfaces based on evolutionary information, physicochemical properties of residues and local geometry of the protein structure. Julia Varga, Laszlo Dobson, Istvan Remenyi and Gabor E. Julia Varga TSTMP: Target Selection for human TransMembrane Tusnady Proteins Aram Gyulkhandanyan Aram Two paths of tumors destruction Gyulkhandanyan Erzsébet Fichó, Bálint Mészáros and István Simon Erzsébet Fichó Two-state Protein Complexes

Proteins poster Proteins poster

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332

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Alexandre Renaux, Ricardo Antunes, Cecilia Arighi, Andrea Alexandre Renaux Auchincloss, Delphine Baratin, Alan Bridge, Elisabeth Coudert, Béatrice Cuche, Edouard De Castro, John S. Garavelli, Emma Hatton-Ellis, Guillaume Keller, Kati Laiho, Maria Martin, Alistair MacDougall, Claire O'Donovan, Ivo Pedruzzi, Klemens Pichler, Diego Poggioli, Luis Pureza, Nicole Redaschi, Catherine Rivoire, C.R. Vinayaka, Vladimir Volynkin, Qinghua Wang, Lai-Su Yeh, Hermann Zellner and Uniprot Consortium Natalie Dawson, Sayoni Das, Ian Sillitoe, David Lee, Natalie Dawson Dragana Dobrijevic, John Ward and Christine Orengo Aytug Kiper, David Ramirez, Susanne Rinné, Wendy David Ramirez Gonzalez and Niels Decher

UniRule - Increasing Annotation Depth of Unreviewed Protein Entries in UniProtKB.

Proteins poster

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Using CATH Functional Families to find Novel Antibiotic Proteins poster Resistance Genes Why Kv1.5 blockers preferentially inhibit TASK-1 Proteins poster channels?

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THEME/TRACK: SYSTEMS EasyChair Author list number

Presenting author

Title

Theme/track assignment

Topics

APPLICATION POSTERS WITHIN SYSTEMS THEME 868 347 529 778 568 789 625

626

660

Hong-Woo Chun and Seonho Kim Meng-Chang Shieh, Nien-Du Yang, Chih-Chieh Chen and Ching-Hsing Luo Emilia Wysocka, Ian Simpson, Matthew Page and James Snowden Dimitris Manatakis, Andrew Sedgewick and Takis Benos

Hong-Woo Chun Meng-Chang Shieh

Hyunjung Shin, Yonghyun Nam, Dong-Gi Lee and Sunjoo Bang Sebastian Thieme, Jesper Romers and Marcus Krantz

Yonghyun Nam

Emilia Wysocka Takis Benos

Sebastian Thieme

Ilona Liesenborghs, Jan S.A.G. Schouten, Lars M.T. Ilona Liesenborghs Eijssen, Martina Kutmon, Theo G.M.F. Gorgels, Chris T. Evelo, Henny J.M. Beckers and Caroll A.B. Webers Jan S.A.G. Schouten, Ilona Liesenborghs, Martina Kutmon, Jan S.A.G. Schouten Lars M.T. Eijssen, Theo G.M.F. Gorgels, Henny J.M. Beckers and Carroll A.B. Webers Vincenzo Belcastro, Carine Poussin, Stephanie Boue, Yang Vincenzo Belcastro Xiang, Florian Martin, Julia Hoeng and Manuel Peitsch Mugdha Srivastava, Sybille Dühring, Stefan Schuster and Thomas Dandekar

810

Fortunato Bianconi

462

Fortunato Bianconi, Lorenzo Tomassoni, Chiara Antonini, Rita Chiari, Elisa Baldelli, Mariaelena Pierobon, Sara Baglivo, Emanuel F. Petricoin, Paolo Valigi, Lucio Crinò and Vienna Ludovini Jan Bert Van Klinken, Ayse Demirkan, Harish Dharuri, Peter Henneman, Aaron Isaacs, Cornelia van Duijn, Peter-Bram 't Hoen and Ko Willems van Dijk Lieven Verbeke, Jimmy Van Den Eynden, Piet Demeester, Jan Fostier and Kathleen Marchal Robin Haw, Guanming Wu and Lincoln Stein

652

Adam Kozak, Dorota Formanowicz and Piotr Formanowicz

Adam Kozak

455

Thanh Phuong Nguyen, Laura Caberlotto, Jochen Schneider and Thomas Sauter Yoshiyuki Asai, Takeshi Abe, Li Li and Hiroaki Kitano

Thanh Phuong Nguyen Yoshiyuki Asai

Seraya Maouche, Clémence Couderc, Marthe Gautier and Bd For Cancer Epidemium John Reid and Lorenz Wernisch

Seraya Maouche

Yin Cai, Julius Hossain, Jean-Karim Heriche, Antonio Politi, Birgit Koch, Malte Wachsmuth, Bianca Nijmeijer and Jan Ellenberg Federica Eduati, Victoria Doldàn, Bertram Klinger, Thomas Cokelaer, Anja Sieber, Fiona Kogera, Mathurin Dorel, Mathew Garnett, Nils Blüthgen and Julio Saez-Rodriguez Manuel Valenzuela, Alejandro Acevedo, Raul Conejeros and German Aroca Bastian Hornung, Bartholomeus van den Bogert, Vitor Martins Dos Santos, Peter J. Schaap and Hauke Smidt Italo Faria Do Valle, Giulia Menichetti, Giorgia Simonetti, Marco Manfrini, Danielle Fernandes Durso, Antonella Padella, Carolina Terragna, Cristina Papayannidis, Carla Adriane Ramos Segatto Fontoura, José Carlos Merino Mombach, Giovanni Martinelli, Gastone Castellani and Daniel Remondini Vardan Andriasyan, Artur Yakimovich, Robert Witte, Fanny Georgi, Ivo Sbalzarini and Urs Greber Andras Hartmann, Susana Martínez, Sascha Zickenrott, Satoshi Okawa and Antonio Del Sol Maryam Nazarieh, Thorsten Will, Mohamed Hamed, Christian Spaniol and Volkhard Helms

Jean-Karim Heriche

444

Stefano Vavassori, Karsta Luettich, Marja Talikka, Justyna Szostak and Julia Hoeng

Stefano Vavassori

846

Gaia Zaffaroni, Luc Grandbarbe, Alessandro Michelucci and Gaia Zaffaroni Antonio Del Sol Mark Alber, Shixin Xu, Zhiliang Xu, Oleg Kim, Rustem Mark Alber, Litvinov and John Weisel

422

323 359 853 667

812

650 383 739

565 742 374

661

418

Systems/Application posterApplication Systems/Application posterApplication

Molecular pathway analysis in patients with primary open angle glaucoma

Systems/Application posterApplication Health

Systems/Application posterApplication Systems/Application posterApplication Health Systems/Application posterApplication Systems/Application posterApplication Fundamental Systems/Application posterApplication Health

The Systems Toxicology Computational Challenge: Systems/Application posterApplication Biotechnology Health Markers of Exposure Response Identification – Insights gained Mugdha Srivastava Understanding of the metabolic interplay between host Systems/Application posterApplication Biotechnology Health and fungi by combining metabolic modeling and game theory OTHER POSTERS WITHIN SYSTEMS THEME

800

640

Biomedical Big data-based Dementia Prediction CEPS: A simulation platform for cardiac electrophysiology models Dimensionality reduction of rule-based simulation results using intrinsic dimensionality analysis Discovering Causal Associations in Omics and Clinical Data Using Mixed Graphical Models Disease Co-occurrence Scoring with Semi-Supervised Learning Improvements in reconstructing biological signalling networks based on rxncon Molecular pathway analysis in human trabecular meshwork cells after treatment with corticosteroids

Systems poster

Fundamental

Jan Bert Van Klinken A functional validation of human genome-scale metabolic models

Systems poster

Fundamental Health

Lieven Verbeke

A multi-purpose network-based data integration strategy for tumour analysis A Refreshing Look at the Reactome Functional Interaction Network. A semi-quantitative Petri net model of oxidative stress in atherosclerosis A systems medicine approach to elucidate the comorbidity network in metabolic diseases A versatile platform for multilevel modeling of physiological systems: integration of time series data Big Data and BioNLP approaches for pharmacovigilance and pharmacogenomics in oncology. Branching Gaussian processes for analysis of cell fate from single cell expresssion Building a dynamic protein atlas of human mitosis

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Federica Eduati

Cell-type specific parameters of signalling pathway models as biomarkers for drug sensitivity

Systems poster

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Raul Conejeros

Characterization of continuous cultures of Systems poster Scheffersomyces stipitis on its phenotypic phase plane. Characterizing and understanding the rumen microbiota Systems poster

Fundamental

Italo Faria Do Valle

Combined genomics and transcriptomics for multi-tumor Systems poster drug targeting

Health

Vardan Andriasyan

Computational modelling of human adenovirus egress

Systems poster

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Andras Hartmann

Constraint Based Reconstruction of Gene Regulatory Systems poster Networks Constructing and analyzing disease-specific or Systems poster developmental stage-specific transcription factor and miRNA co-regulatory networks Construction of a computable biological network model Systems poster focused on goblet cell hyperplasia/metaplasia in the lung

Health

Context-specific gene regulatory network to identify key genes in differentiation of NSCs to astrocytes Coupled multi-scale modeling and experimental study of platelet adhesion and blood clot deformation and rupture Detection of gene communities in multi-networks reveals cancer drivers. Different copies, different roles – paralogous genes in lateral root gene regulatory network of oilseed rape Digestor: a software tool to determine relative abundance of glycans from exoglycosidase digestons DrugLogics: Logical models for drug screen prioritization

Systems poster

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Agro-Food

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Biotechnology Health

Systems poster

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Robin Haw

John Reid

Bastian Hornung

Maryam Nazarieh

A case series study using RPPA data and computational analysis underscores the complex signaling pathways in lung cancer

Ecosystems

Fundamental

Health

Michele Caselle, Laura Cantini,Santo FortunatoandEnzo Medico Jiajia Xu, László Kupcsik, Dirk Inzé and Christian Hermans

Michele Caselle

419 498

Ian Walsh, Christopher H. Taron and Pauline M. Rudd

Ian Walsh

766

Åsmund Flobak

9

Åsmund Flobak, Tonje Strømmen Steigedal, Barbara Niederdorfer, Liv Thommesen, Martin Kuiper and Astrid Lægreid Olga Nev and Hugo van den Berg

Olga Nev

Fundamental

Hung-Cuong Trinh and Yung-Keun Kwon

Hung-Cuong Trinh

Systems poster

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428

Konstantine Tchourine, Richard Bonneau and Christine Vogel Yuriy Hulovatyy, Huili Chen and Tijana Milenkovic

Dynamic allocation as a stoichiometric control mechanism in bacterial cells Edge-based sensitivity analysis of signaling networks by using Boolean dynamics Konstantine Explicit Modeling of Differential RNA Stability Improves Tchourine Inference of Transcription Regulation Networks Tijana Milenkovic Exploring the structure and function of temporal networks with dynamic graphlets Maria Victoria Aguilar Expression data integration in an Aspergillus niger Pontes genome-scale metabolic model Safiye Celik Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer Silvia Gerber Genome-wide gene regulatory network in the opportunistic human pathogenic fungi Aspergillus fumigatus Josephine Thomas How network topological models influence drug-target prediction

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835

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Erika Tsingos

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663 495 698

Maria Victoria Aguilar Pontes, Julian Brandl, Adrian Tsang, Mikael R Andersen and Ronald de Vries Safiye Celik, Benjamin Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee

328

Silvia Gerber, Reinhard Guthke and Jörg Linde

570

Simone Daminelli, Josephine Thomas, V. Joachim Haupt, Claudio Duran, Michael Schroeder and Carlo Vittorio Cannistraci Erika Tsingos, Burkhard Höckendorf, Thomas Sütterlin, Stephan Kirchmaier, Lázaro Centanin, Niels Grabe and Joachim Wittbrodt

630

Jiajia Xu

How tissues coordinate growth in an organ: Insights from modeling clonal lineages in fish

759 756

875 543 394 396 540 532 657 607

745

392 730

497

582 490

624 433

602 743 874 316 575 505 447

Adel Ait Hamlat, Alessandra Carbone, Thierry Jaffredo, Pierre Charbord and Charles Durand Paul Ashford, Anna Hernandez, Todd Greco, Anna Buch, Beate Sodeik, Ileana Cristea, Kay Grünewald, Adrian Shepherd and Maya Topf Weronika Wronowska, Grzegorz Bokota, Michał Kadlof, Jacek Sroka, Andrzej Kierzek and Dariusz Plewczynski Tsukasa Fukunaga and Wataru Iwasaki Jennifer Scheidel, Leonie Amstein, Börje Schweizer, Jörg Ackermann and Ina Koch Laura Cantini, Emmanuel Barillot, Francois Radvanyi and Andrei Zinovyev Lingfei Wang and Tom Michoel Mustafa Alshawaqfeh, Ahmad Bani Younes and Erchin Serpedin Krzysztof Gogolewski, Weronika Wronowska, Bogdan Lesyng andAnna Gambin Laura Follia, Giulio Ferrero, Niccolò Totis, Chiara Riganti, Francesco Novelli, Gianfranco Balbo, Marco Beccuti and Francesca Cordero Robert Sehlke, Luke Tain, Manopriya Chokkalingam, Nazif Alic, Nagarjuna Nagaraj, Matthias Mann, Christoph Dieterich, Andreas Beyer and Linda Partridge Nirupama Benis, Soumya Kar, Dirkjan Schokker,Vitor A.P. Martins Dos Santos, Maria Suarez Diez and Mari Smits Ezequiel Iván Juritz, Max Schobert, Kenneth Timmis, Fernando Danilo Gonzalez-Nilo, Lothar Jansch, Dieter Jahn and Jose Manuel Borrero de Acuña Kirstine Belling, Francesco Russo, Anders Boeck Jensen, Marlene Danner Dalgaard, David Westergaard, Niels Erik Skakkebæk, Anders Juul and Søren Brunak Bernhard Steiert, Jens Timmer and Clemens Kreutz

Adel Ait Hamlat

Hub centered deconvolution improves gene regulatory network reconstruction HVint: A strategy for identifying novel protein-protein interactions in herpes simplex virus type 1

Systems poster

Fundamental

Systems poster

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Weronika Wronowska iCell: Multiscale modelling of tumour development, a case study of Her2-positive breast cancer Wataru Iwasaki Importance of considering simple factors in C. elegans behavioral analysis Jennifer Scheidel In silico knockout experiments based on Petri net models Laura Cantini Independent Component Analysis unveils the landscape of multi-omics pancancer data Lingfei Wang Infer pairwise gene regulations with Findr Erchin Serpedin Inferring Microbial Interaction Network Using a Stochastic Generalized Lotka-Volterra Model Krzysztof Gogolewski Inferring molecular pathways heterogeneity from transcriptional data Laura Follia Inspecting Energy Realising Pathways by combination of genomics data and mechanistic approach.

Systems poster

Biotechnology

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Systems poster Systems poster

Fundamental Ecosystems

Systems poster

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Robert Sehlke

Integration of two Drosophila insulin mutant models reveals tissue-specific mechanisms of longevity

Systems poster

Fundamental Health

Nirupama Benis

Integration of –omics data measured at different Systems poster biological levels Integrative protein network from universal stress protein Systems poster UspK

Agro-Food

Klinefelter syndrome comorbidities induced by increased X gene dosage and altered protein interactome activity. L1 regularization facilitates detection of cell typespecific parameters in dynamical systems Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy’ Logical model specification aided by model checking: application to the mammalian cell cycle regulation Logical modelling of the regulatory network governing dorsal-ventral axis specification in the sea urchin P. lividus Mechanisms of non-oncogene addiction

Systems poster

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Systems poster

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Systems poster

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Anna Hernandez

Ezequiel Iván Juritz

Francesco Russo

Bernhard Steiert

Theo Knijnenburg, Gunnar Klau, Francesco Iorio, Mathew Garnett, Ultan McDermott, Ilya Shmulevich and Lodewyk Wessels Pauline Traynard, Adrien Fauré, François Fages and Denis Thieffry Céline Hernandez, Swann Floc’hlay, Morgane ThomasChollier, Thierry Lepage and Denis Thieffry

Theo Knijnenburg

Jessica Hu, Francesco Russo, Jose Maria GonzalezIzarzugaza and Søren Brunak Sander Rodenburg, Michael Seidl, Francine Govers and Dick de Ridder Weronika Wronowska, Krzysztof Gogolewski, Marcin Kostecki and Anna Gambin Aliaksei S Vasilevich, Shantanu Singh, Aurélie Carlier and Jan de Boer Mathias Cardner, Nathalie Meyer-Schaller, Gerhard Christofori and Niko Beerenwinkel Céline Hernandez, Wassim Abou-Jaoudé, Romain Roncagalli, Bernard Malissen and Denis Thieffry Andreas Hillmann, Martin Crane and Heather Ruskin

Jessica Hu

Pauline Traynard Céline Hernandez

Systems poster

Biotechnology

Metabolic network construction of the Phytophthora infestans – tomato pathosystem Weronika Wronowska Metabolomic scale analysis of the mechanism of C2 ceramide induced cell death Aurélie Carlier Mining for osteogenic surface topographies using machine learning techniques Mathias Cardner Modelling gene regulatory networks during EMT

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Agro-Food

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Céline Hernandez

Modelling of T cell co-inhibitory pathways to predict antitumour responses to checkpoint inhibitors Andreas Hillmann Moving HIV Treatment Interruption Modelling to a new level - a computational approach Ferran Briansó Multivariate Methods for the Integrative Analysis of Transcriptomics and Proteomic Data in a Study on Ischemic Stroke Natalia Rubanova Network analysis of genome-wide loss-of-function screens and its application to cancer research Mushthofa Mushthofa Network-based prediction of cancer drug response

Systems poster

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Emre Guney ProXide: Proximity based drug side effect detection Katarzyna Rżosińska Quantitative model of processes associated with formation of atherosclerotic plague based on continuous Petri net Sara Ciucci Revealing discriminative network functional modules in omic sciences: an easy and fast unsupervised multivariate method

Systems poster Systems poster

Health Health

Systems poster

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Thierry Lombardot

Rhea, an expert curated resource of biochemical reactions for enzyme annotation and genome-scale metabolic modeling

Systems poster

Fundamental

Marek Blazewicz

Searching for Common Patterns in Biological Datasets

Systems poster

Biotechnology

Iryna Nikolayeva

Simple enough biomarkers predict a complex disease phenotype Stoichiometric correlation analysis: towards principles of metabolic functionality from metabolomics data Systems Biology of calcium and hormone signalling in plant cells Systems-level network analysis in white-to-brite adipocyte conversion The increase in the antigen concentration may lead to recovery of patients – computer simulation studies The SwissLipids knowledgebase for lipid biology

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Agro-Food

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Quentin Da Costa

Time-dependent interactome – transcriptome analysis of PDAC tumorigenesis

Systems poster

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Adrien Fauré Juris Viksna

Towards a new definition of circuit functionality Towards experimental validation of models of gene regulatory networks Transcriptomic and proteomic response of Aspergillus fumigatus to caspofungin

Systems poster Systems poster

Fundamental Fundamental

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Using network-extracted ontologies to identify novel disease pathways in the pathogenic yeast Candida albicans.

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Sander Rodenburg

588

Ferran Briansó, Teresa García-Berrocoso, Joan Montaner and Alex Sánchez

431

Natalia Rubanova and Nadya Morozova

870

Mushthofa Mushthofa, Martine De Cock and Kathleen Marchal Alexander Spirov, Ekaterina Myasnikova and David Holloway David Holloway

879

577

Dries De Maeyer, Bram Weytjens and Kathleen Marchal

Dries De Maeyer

880

Simone Lederer and Tjeerd Dijkstra

Simone Lederer

NONLINEAR MODEL FOR MODULAR GENE EXPRESSION CONTROL, APPLIED TO SPATIAL PATTERNING OF THE DROSOPHILA GENE HUNCHBACK Oilseed rape co-expression network reveals mechanisms of root architecture adaptation On the modeling and analysis of the biological regulatory network of NF‑κB activation in HIV‑1 infection Pathway analysis of Rett syndrome omics data; an example of knowledge driven molecular data analysis in the rare disease domain PheNetic: Integration analysis of parallel omics data sets using multiple evidence networks Predicting Compound Synergy in the DREAM Challenge

430

Otoniel Rodríguez-Jorge, Linda Aimara Kempis-Calanis, Darely Yarazeth Gutiérrez-Reyna, Oscar Ramirez-Pliego, Wassim Abou-Jaoudé, Morgane Thomas-Chollier, Angélica Santana and Denis Thieffry Emre Guney Katarzyna Rżosińska, Dorota Formanowicz and Piotr Formanowicz

Otoniel RodríguezJorge

Predictive logical modelling of TLR5 and TCR cooperation for CD4 T cell activation.

420 804

878

523 707

614

501

642

609 437 353 758 603 494

719

727 442 391

351

László Kupcsik, Jiajia Xu, Guangyong Zheng, Xin-Guang László Kupcsik Zhu, Dirk Inzé and Christian Hermans Zurah Bibi, Jamil Ahmad, Amjad Ali, Amnah Siddiqa, Zurah Bibi Shaheen Shahzad, Samar Hayat Khan Tareen and Hussnain Ahmed Junjua Friederike Ehrhart, Kristina Hettne, Marco Roos, Leopold G. Friederike Ehrhart Curfs and Chris T. Evelo

Sara Ciucci, Yan Ge, Alessandra Palladini, Víctor Jiménez Jiménez, Luisa María Martínez Sánchez, Susanne Sales, Andrej Shevchenko, Steven W. Poser, Oliver Otto, Maik Herbig, Andreas Androutsellis-Theotokis, Jochen Guck, Mathias J. Gerl and Carlo Vittorio Cannistraci Thierry Lombardot, Anne Morgat, Kristian Axelsen, Lucila Aimo, Nevila Nouspikel, Steven Rosanof, Joseph Onwubiko, Elisabeth Coudert, Nicole Redaschi, Lydie Bougueleret, Ioannis Xenarios and Alan Bridge Marek Blazewicz, Giovanni Felici, Aleksandra Swiercz, Daniele Santoni, Marcin Jaroszewski, Agnieszka Zmienko and Marta Kasprzak Iryna Nikolayeva, Kevin Bleakley, Anavaj Sakuntabhai and Benno Schwikowski Kevin Schwahn, Romina Beleggia, Nooshin Omranian and Zoran Nikoloski Junli Liu, Marc Knight and Keith Lindsey

Biotechnology

Kevin Schwahn Junli Liu

Juan Carlos Higareda-Almaraz, Michael Karbiener, Florian Pauler, Stephan Herzig and Marcel Scheideler Joanna Ziobro, Paweł Błażej and Paweł Mackiewicz

Juan Carlos Higareda-Almaraz Joanna Ziobro

Lucila Aimo, Robin Liechti, Nevila Hyka-Nouspikel, Anne Niknejad, Anne Gleizes, Lou Götz, Dmitry Kuznetsov, Fabrice David, F. Gisou van der Goot, Howard Riezman, Lydie Bougueleret, Ioannis Xenarios and Alan Bridge Quentin Da Costa, Fabienne Guillaumond, Claire Rioualen, Sadia Beloribi-Djefaflia, Victoire Gouirand, Julie Roques, Isabelle Crenon, Eric Mas, Sophie Vasseur and Ghislain Bidaut Adrien Fauré and Takeyuki Tamura Juris Viksna, Alvis Brazma, Karlis Cerans, Dace Ruklisa and Thomas Schlitt Theresia Conrad, Olaf Kniemeyer, Thomas Krueger, Sebastian G. Henkel, Axel A. Brakhage, Reinhard Guthke and Joerg Linde Ryan Ames

Lucila Aimo

Theresia Conrad

Ryan Ames

THEME/TRACK: TRAINING EasyChair Author list number

Presenting author

Title

Theme/track assignment

Topics

591

Óscar Torreño Tirado, Oswaldo Trelles, Michael T. Krieger and Alex Upton Vera Matser, Cath Brooksbank, Rossen Apostolov, Adam Carter, Alexandre Bonvin, Mark Abraham and Emiliano Ippoliti Janick Mathys, Christof De Bo and Alexander Botzki

Michael T. Krieger

An overview of training in the Spanish ELIXIR node

Training poster

Training

Vera Matser

Training poster

Training

Training poster

Training

Sandrine Perrin, Victoria Dominguez Del Angel, Jonathan Lorenzo, Jean-François Gibrat and Christophe Blanchet Kim Gurwitz, Shaun Aron, Sumir Panji, Suresh Maslamoney, Pedro Fernandes, David Judge and Nicola Mulder Teresa K Attwood, Pamela Black, Marie-Claude Blatter, Cath Brooksbank, Pedro L Fernandes, Nicola Mulder, Patricia M Palagi, Gabriella Rustici, Maria Victoria Schneider and Celia W G van Gelder Sarah L Morgan, Richard Grandison, Katrina Costa, Lee Larcombe and Cath Brooksbank Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, Florian Korninger, Steven Jupe, Phani Garapati, Peter D'Eustachio, Lincoln Stein and Henning Hermjakob Konstantinos Sidiropoulos, Antonio Fabregat, Guilherme Viteri, Florian Korninger, Peter D'Eustachio, Lincoln Stein and Henning Hermjakob Thanh Le Van, Matthijs van Leeuwen, Ana Carolina Fierro, Dries De Maeyer, Jimmy Van den Eynden, Lieven Verbeke, Luc De Raedt, Kathleen Marchal and Siegfried Nijssen Sarah Morgan, Teresa K Attwood, Brane Leskosek, Gabriella Rustici and Allegra Via

Victoria Dominguez Del Angel Kim Gurwitz

Applying competency profiling of user groups to develop a training programme in Computational Biomolecular Research Bioinformatics Training at VIB: laying the cornerstones for life scientists to survive in data-intense biotech research Cloud Computing Training at French ELIXIR node (French Institute of Bioinformatics) Distance-based online Bioinformatics training in Africa: the H3ABioNet experience

Training poster

Training

Training poster

Training

Pedro L Fernandes

GOBLET’s Bioinformatics Learning, Education and Training Activities

Training poster

Training

Cath Brooksbank

Providing bioinformatics training for established researchers Reactome: A curated knowledgebase of biomolecular pathways

Training poster

Training

Training poster

Training

Guilherme Viteri

Reactome: New services and widgets to ease thirdparty integration

Training poster

Training

Thanh Le Van

Simultaneous discovery of cancer subtypes and subtype features by molecular data integration

Training poster

Training

Brane Leskosek

Surveying training provision, needs and capacity across Training poster ELIXIR nodes and EXCELERATE use-cases to map skill transfer routes in Europe The eBioKit, a stand-alone educational bioinformatics Training poster platform

Training

The Galaxy Training Network: centralizing resources for Training poster galaxy trainings

Fundamental Training

The SIB PhD Training Network: an initiative to gather, connect and train PhD students in Bioinformatics The SIB Swiss Institute of Bioinformatics Training Group: Supporting the development and sustainability of effective bioinformatics training Train-the-Trainer: GOBLET’s initiative to increase the provision of bioinformatics training in NGS

Training poster

Training

Training poster

Training

Training poster

Training

Training efforts in the Netherlands: combining forces to provide data – related training for the life science research community

Training poster

Training

445

746

615 837

685

791 402

403

416

747

790

559

682 692

672

776

Janick Mathys

Antonio Fabregat

Rafael Hernández-De-Diego, Tomas Klingström, Hadrien Hadrien Gourlé Gourlé, Etienne P. de Villiers, Ana Conesa and Erik Bongcam-Rudloff Youri Hoogstrate, Saskia Hiltemann, Dave Clements, Bjoern Youri Hoogstrate Grüning, Andrew Stubbs, Hans-Rudolf Hotz and Galaxy Training Network Gregoire Rossier and Patricia M. Palagi Gregoire Rossier Diana Marek, Gregoire Rossier, Geoffrey Fucile, Walid H. Gharib, Frédéric Schütz, Marie-Claude Blatter and Patricia M. Palagi Patricia M. Palagi, Erik Bogcam-Rudloff, Pedro Fernandes, Eija Korpelainen, Fran Lewitter, Gabriella Rustici, Maria Victoria Schneider, Celia W.G. van Gelder and Teresa K. Attwood Celia van Gelder, Sanne Abeln, Rita Azevedo, Luiz Olavo Bonino Da Silva Santos, Jeroen Engelberts, Rob W. W. Hooft, Mateusz Kuzak, Leon Mei, Marco Roos, Merlijn van Rijswijk, Andrew Stubbs and Jaap Heringa

Diana Marek

Patricia M. Palagi

Celia van Gelder

Training