Biomarkers for PD-1 checkpoint inhibition

Biomarkers for PD-1 checkpoint inhibition Suzanne L. Topalian Johns Hopkins University School of Medicine Sidney Kimmel Comprehensive Cancer Center Th...
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Biomarkers for PD-1 checkpoint inhibition Suzanne L. Topalian Johns Hopkins University School of Medicine Sidney Kimmel Comprehensive Cancer Center Thirteenth Annual Kidney Cancer Symposium October 24, 2014

Disclosures Consultant for: Bristol-Myers Squibb (uncompensated), Five Prime Therapeutics, GSK, Jounce Therapeutics, and Amplimmune (spouse) Grant/Research support from: Bristol-Myers Squibb Stock options: Jounce Therapeutics (spouse)

Royalties through institution: Amplimmune (spouse)

Objective response rate (%)

Clinical activity of PD-1 and PD-L1 blocking antibodies validates this pathway as a target for cancer therapy 50 40

MK-3475

30

Nivolumab

20

BMS-936559

10

Anti-PD-1

Anti-PD-L1

MPDL3280A nr

0 Melanoma

NSCLC

nr, not reported

RCC

ASCO 2014: New evidence for activity in advanced bladder cancer (ORR 25%, MPDL), SCCHN (20%, MK-3475; 14%, MEDI4736); ovarian cancer (17%, nivo)

Objective response rate (%)

Clinical activity of PD-1 and PD-L1 blocking antibodies validates this pathway as a target for cancer therapy 50

????

40 30

MK-3475 Nivolumab

20

BMS-936559

10

MPDL3280A nr

0 Melanoma

NSCLC

nr, not reported

RCC

Anti-PD-1

Anti-PD-L1

Role of PD-1 pathway in suppressing antitumor immunityActivation (cytokines, lysis, prolif., migration)

APC

T cell B7.1

MHC-Ag

CD28 TCR Signal 1

PD-1 PD-L1 Tumor

(-)

Inhibition (anergy, exhaustion, death)

(-)

(-)

Tumor

AntiPD-1

Factors potentially influencing response to PD-1 pathway blockade 2) T cell migration/proliferation

APC

T cell B7.1

MHC-Ag

CD28 TCR

1) T cell specificity

Tumor

PD-1 PD-L1

(-)

3) Tumor cell PD-L1 expression

(-)

(-)

Tumor

AntiPD-1

Mutational heterogeneity in cancer creates opportunities for immune recognition Lawrence et al., Nature 2013

 Does tumor mutational density predict response to immunotherapy (pre-Rx marker)?  Is successful immunotherapy associated with reactivity against specific mutant tumor antigens (on-Rx marker)?

Cancer exome-guided on-treatment analysis of effects of ipilimumab: Evolution of dominant CD8+ T cell response against melanoma-associated mutation in a responding patient 5X

1075 non-synonomous somatic mutations

Adapted from van Rooij et al., JCO 2013

On-treatment biomarkers: selective infiltration of CD8+ T cells precedes melanoma response to anti-PD-1 Pre-Rx

Pre-Rx

2.6 cm 1 12 wk post Dose

4 wk post Dose 1

2.4 cm 8 wk post Dose 3

4 wk post Dose 3

Intermittent dosing regimen of nivolumab (Brahmer et al., JCO 2010)

Melanoma

Preliminary correlation of PD-L1 expression in pre-treatment tumor biopsies, with clinical response to anti-PD-1 therapy 18/18

Proportion of patients

1

Kidney

0.8 18/31

0.6

0.4

CR/PR PD-L1(+) NR

13/31

0.2

Lung

p=0.002 0/18

0 PD-L1(+)

PD-L1(-) 49 patients include 20 with melanoma,13 NSCLC, 7 colon, 6 kidney, and 3 prostate cancer (adapted from Topalian et al., NEJM 2012)

PD-L1 IHC methods currently in testing JHU

BMS

Merck

Roche

mAb clone

5H1

28-8

22C3

SP142

Automated

No

Yes

Yes

Yes

Staining location scored

Membrane

Membrane

Membrane

Membrane

Cell type(s) scored

Tumor cells

Tumor cells

Tumor and/or infiltrating imm. cells

Infiltrating immune cells

Positive cutoff

≥ 5%

≥ 5%

≥ 1%

≥ 1% to ≥ 10% (“IHC 1-2-3”)

 Note: these assays are still under development pending additional clinical correlative data

n=

iv

ba iz d & s e um N t a ab ec lA M k SC el O an 20 om 14 a )

(T o l op u al m ia a N n et a b S iv l. N o EJ lid (W o l eb u m M 2 T er 0 u AS ab 12) m N CO M or iv 2 e s 01 o (G l 3 l ro um ) an ss om o et ab a M al. M P D AS e C (H L O la er 3 20 n bs 2 13 o te 8 ) m 0 t a M al a A PD SC So O (H L 20 lid am 3 id 28 13) T um e M t al A 0a or P SC M s O e (S DL 20 la or 3 13 n ia l e 28 ) om ta 0 Pe l E a a m C C 2 NS (D b 01 C au r 3) L C d ol et iz a u Pe l A m m A C R ab (G b 20 an r 14 M dh ol ) el i e iz an u t M al m om PD AAC a b (P R a ow L3 20 N 14 S el 2 C se 8 0 ) LC Pe t al A a B m SCO la (S b 20 dd el r 14 e w o er li ) r te z u t Pe al A m m SCO ab (R bro 201 He i l 4) a

N

Intra-tumoral PD-L1 expression and response to PD-1/PD-L1 blockade

Response Rates 42 44 34 94 30 53 113 129 65 55 411

Unselected 21% 32% 29% 22% 23% 23% 40% 19% 26% 18% 40%

PD-L1 + 36% 67% 44% 39% 27% 46% 49% 37% 43% 46% 49%

PD-L1 − 0% 19% 17% 13% 20% 15%* 13% 11% 11% 11% 13%

Presented by: Margaret Callahan

Pitfalls for PD-L1 “biomarker”: Immunologic heterogeneity of anatomically and chronologically distinct tumors Patient no.

Clinical Resp.

Biopsy site

1

NR

SQ met #1

5-10

SQ met #2

0

Skin primary

20

LN met

0

Skin primary

5

SQ met

0

LN met

0

Skin primary

5

LN met #1

0

LN met #2

5

Lung met #1

5

Lung met #2

50

2

3

4

5

NR

CR

NR

PR

PD-L1 IHC (%pos. tumor cells)

Variable expression of PD-L1 among melanoma lesions from individual patients receiving anti-PD-1 therapy. “PD-L1+ tumor”: ≥ 5% tumor cells with cell surface PD-L1 expression “PD-L1+ patient”: patient in whom any tumor is/was PD-L1+ (Topalian et al., NEJM 2012)

Pitfalls for PD-L1 biomarker: focal expression in some tumors “Marker negative” specimen or sampling error???

Invasive primary melanoma, nodular subtype. 10% of tumor cells express PD-L1.

Tumor

Lymphs

Association of TILs with tumor PD-L1: TILs are necessary but not sufficient for PD-L1 expression in melanoma % of cases

100 80

TILs No TILs

60

p