A brief tour of everything we know about the brain
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 1
Why the brain, which brain, and what specifically within the brain? mind body nervous system peripheral (PNS)
central (CNS)
brain neurons 1:10 glial cells
spinal cord
hindbrain midbrain membrane forebrain ion potential concentrations diencephalon telencephalon basal ganglia subthreshold spikes cortex fluctuations paleocortex archicortex rates temporal patterns neocortex Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 2
Your brain
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 3
Your cortex unfolded neocortex 6 layers ~30 cm ~0.5 cm
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 4
Your cortex unfolded
1 cubic millimeter, ~3*10-5 oz (0.85mg)
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 5
More numbers... 1 mm3 of cortex:
1 mm2 of a CPU:
50,000 neurons 10000 connections/neuron (=> 500 million connections) 4 km of axons
1 million transistors 2 connections/transistor (=> 2 million connections) .002 km of wire
whole brain (2 kg):
whole CPU:
1011 neurons 1015 connections 8 million km of axons
109 transistors 2*109 connections 2 km of wire
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 6
The elementary unit of the nervous system: the neuron fénymikroszkóppal
neuron dendrite soma nucleus axon initial segment terminal synapse glia myelin sheath node of Ranvier
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 7
A little cell biology
nucleus plasma membrane
lipid bilayer proteins integral peripheral extracellular space (ECS) intracellular space (ICS)
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 8
Around the cell membrane Factors affecting the membrane transport of ions The permeability of the cell membrane is different for different species of molecules or ions
Membrane transport is made possible by transmembrane proteins • • •
pumps (+energy!) channels transporters
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 9
The electric cell: the resting membrane potential Phenomenon: voltage difference between the two sides of the membrane
Reason: on the two sides of the membrane • different concentrations of ions, • different permeability for different ions Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 10
The electric neuron: the action potential Action potential: a momentary deflection of the membrane potetntial
propagating action potential Time: 0 ms
Time: 1 ms
Time: 2 ms
threshold potential resting potential
»all or none« Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 11
Between two neurons: the synapse ionotropic (A) és metabotropic (B,C) receptors
structure and operation of a synapse
excitatory and inhibitory postsynaptic potentials
changes with learning Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 12
Basic biophysics
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 13
Origin of the resting membrane potential
Nernst-equation: relation ship between differences in ionconcentrations and the potential in equilibrium for a single ionic species
R T [C ]ext E=V int !V ext= ln z F [C ]int • multiple
independently moving ionic species • constant field within membrane
Goldman-Hodgkin-Katz-equation (GHK): resting membrane potential as a function of individual ionic concentrations and permeabilities
V rest= Nernst-Planck equation: ion flux (current) as a function of the electrochemical potential
RT F
PK[K
]ext $P Na [ Na+ ]ext$ PCl [ Cl -]int ln + + P K [ K ] ext $P Na [ Na ] int $P Cl [ Cl ] ext
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
+
Máté Lengyel: Intro + Biophysics 1 / 14
Conductance-based modeling EC liquid
V IC Rm= 1/gm
Cm
EC
lipid core: capacitance
dV & t ' V &t ' Cm =! =!V & t ' g m dt Rm ion channel: resistance (conductance)
capacitive current
resisitive or conductive current
IC liquid (plasm) t Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 15
Parallel conductances V Cm
gCl ECl
-90mV
gNa ENa
gK EK
+100mV
V
Iext K+
Current-balance equation:
dV C m = I Cl &t '$I Na &t'$I K &t'$ I ext &t ' dt
Na+
Individual ionic currents:
I leak &t'= g leak & E leak!V & t ' '
I Na &t '=g Na &t ' & E Na !V &t ' ' I K &t '=g K &t ' & E K !V & t ' ' Nernstconductance potential
driving force
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
Máté Lengyel: Intro + Biophysics 1 / 16
Hodgkin-Huxley model / 1 V Cm
gleak Eleak
gNa ENa
gK EK
Iext
Current-balance equation:
Cm
dV & t ' = g leak & E leak!V & t ' ' $g Na & t ' & E Na !V &t ' '$g K & t ' & E K !V & t ' '$ I ext & t ' dt leak (mainly Cl-) current
closed
Ion currents:
open
3
g Na &t '= g% Na #m & t '#h& t ' 4
g K & t ' = g% K #n & t '
probability of being open for an individual gate
maximal probability of being open conductance for an individual channel (channel density)
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
gate
gate
channel
Máté Lengyel: Intro + Biophysics 1 / 17
Hodgkin-Huxley model / 2 at the core of the HH, voltage-dependent gating kinetics:
1-m
?m
9
*h
open m
m & V & t ' '!m & t ' dm & t ' =( m & V &t ' '& 1!m & t ' '!)m &V & t ' ' m & t '= " dt *m & V & t ''
( m &V '$)m & V '
*m
)m
1
(m
0 1
h" m"
[1]
( m & V '$)m & V ' 1
[1, msec]
* m & V '=
(m & V '
*n
0
30 [1/msec]
m " &V '=
[msec]
closed
?m
m"
n"
*m
0 -100
0 -100 V [mV]
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
V [mV]
50
50
Máté Lengyel: Intro + Biophysics 1 / 18
Hodgkin-Huxley model / 3 HH model in operation: 40 V [mV] -80
membrane potential
1
m
n
x [1]
gating variables
h 0 40 g [ S/cm2] 0
Na
channel conductances
K
leak K
0
t [msec]
Theoretical Neuroscience I – Gatsby Computational Neuroscience Unit, UCL, 2006 Fall http://www.gatsby.ucl.ac.uk/teaching/courses/tn1-2006.html
50
I [nA/cm2] -800
channel currents
800
Na
Máté Lengyel: Intro + Biophysics 1 / 19